| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,949,968 – 19,950,138 |
| Length | 170 |
| Max. P | 0.921940 |
| Location | 19,949,968 – 19,950,080 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 72.81 |
| Mean single sequence MFE | -24.96 |
| Consensus MFE | -7.01 |
| Energy contribution | -7.57 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.28 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.843506 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19949968 112 - 20766785 GCUGGCCAAUAAUUGCAAUUUAAAUGCACAAAAGCCGCAGAGCAACGCA----UAUUCAUACAUACAUAUGUACGUACGUAUGGGUAAUUCUUCGGCAGUAUUCCAGUCACAGUAU (((((..((((..((((.......)))).....((((.((((..((.((----(((...(((.(((....))).))).))))).))..)))).))))..)))))))))........ ( -28.00) >DroSim_CAF1 35269 104 - 1 GCUGGCCAAUAAUUGCAAUUUAAAUGCACAAAAGCCGCAGAGCAGCGCA----UAUACAUACA--------UAUGUACGUAUGGGUAAUUCUUCGGCAAUAUUCCAGUCACAGUAU (((((..((((..((((.......)))).....((((.((((..((.((----(((((((...--------.))))..))))).))..)))).))))..)))))))))........ ( -26.90) >DroEre_CAF1 32013 98 - 1 GCUGGCCAAUAAUUGCAAUUUAAAUGCACAAAAGCCGCAGACCUGUGUA----UGUACUU--------G--UAUA----UAUGGGUAAUUCUUCGGCCGUAUUCCAGUCACAGUAU (((((..((((..((((.......)))).....((((.(((((((((((----((.....--------.--))))----))))))....))).))))..)))))))))........ ( -24.40) >DroYak_CAF1 30793 106 - 1 GCCGGCCAAUAAUUGCAAUUUAAAUGCACAAAAGCCGCAGACCAGUGUACGUAUGCACAU--------G--UAUAUACAUAUGGGUAAUUCUUCGGCAGUAUUCCAGUCACAGUAU ...(((.......((((.......)))).....((((.((((((((((..((((((....--------)--))))))))).))).....))).)))).........)))....... ( -22.10) >DroAna_CAF1 32367 97 - 1 GCUCUGCAGUGAUGGCAAUUAAAAUGCAGAAAAAGUGCAGUCUCCUCUAGGACUACACG---------G--AAUACAC-----AAUAAUACUUUGAC---AUUCCACUCACAAUAU ..((((((.((((....))))...))))))....(((.(((((......))))).)))(---------(--(((...(-----((.......)))..---)))))........... ( -23.40) >consensus GCUGGCCAAUAAUUGCAAUUUAAAUGCACAAAAGCCGCAGACCAGUGUA____UAUACAU________G__UAUAUAC_UAUGGGUAAUUCUUCGGCAGUAUUCCAGUCACAGUAU (((((.........(((.......)))......((((.(((................................................))).))))......)))))........ ( -7.01 = -7.57 + 0.56)
| Location | 19,950,040 – 19,950,138 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 93.67 |
| Mean single sequence MFE | -29.96 |
| Consensus MFE | -25.64 |
| Energy contribution | -25.36 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.86 |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.921940 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19950040 98 + 20766785 CUGCGGCUUUUGUGCAUUUAAAUUGCAAUUAUUGGCCAGCCUGUGAGAAGGAUAUUUGCCAGCAGGAUAAACAGCUGCAGUUUAGCAUUGUUUUGGCA ((((((((....((((.......))))......))))..(((......)))..........))))(..((((((.(((......)))))))))...). ( -25.80) >DroSec_CAF1 33064 98 + 1 CUGCGGCUUUUGUGCAUUUAAAUUGCAAUUAUUGGCCAGCCUGGGAGAAGGAUAUUCGCCAGCAGGACAAAAAUCUGCAGUUUAGCAUUGUUUUGGCA ((((((((....((((.......))))......))))......((.(((.....))).)).))))..(((((...(((......)))...)))))... ( -26.50) >DroSim_CAF1 35333 98 + 1 CUGCGGCUUUUGUGCAUUUAAAUUGCAAUUAUUGGCCAGCCUGGGAGAAGGAUAUUCGCCAGCAGGACAAACAGCUGCAGUUUAGCAUUGUUUUGGCA ((((((((((((((((.......))).........((.((.(((..(((.....))).))))).))))))).))))))))....((.........)). ( -27.70) >DroEre_CAF1 32071 97 + 1 CUGCGGCUUUUGUGCAUUUAAAUUGCAAUUAUUGGCCAGCCUGG-CGAAGGAUAUUUGCCAGCAGGACAAACAGCUGCAGUUUAGCAUUGUUUUGCCA ((((((((((((((((.......))).........((.((.(((-((((.....))))))))).))))))).))))))))....(((......))).. ( -34.10) >DroYak_CAF1 30859 98 + 1 CUGCGGCUUUUGUGCAUUUAAAUUGCAAUUAUUGGCCGGCCUGGGAGCAGGACAUUGGCCGGCAGGACGAACAGCUGCAGUUUAGGAUUGUUUUGCCA ((((((((((((((((.......)))........(((((((..(........)...)))))))...))))).))))))))....((.........)). ( -35.70) >consensus CUGCGGCUUUUGUGCAUUUAAAUUGCAAUUAUUGGCCAGCCUGGGAGAAGGAUAUUCGCCAGCAGGACAAACAGCUGCAGUUUAGCAUUGUUUUGGCA ((((((((((((((((.......))).....(((((...(((......)))......)))))....))))).)))))))).................. (-25.64 = -25.36 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:22 2006