Locus 6366

Sequence ID 2R_DroMel_CAF1
Location 19,948,588 – 19,948,689
Length 101
Max. P 0.538861
window10168

overview

Window 8

Location 19,948,588 – 19,948,689
Length 101
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 90.06
Mean single sequence MFE -27.85
Consensus MFE -25.22
Energy contribution -25.63
Covariance contribution 0.42
Combinations/Pair 1.09
Mean z-score -1.18
Structure conservation index 0.91
SVM decision value 0.01
SVM RNA-class probability 0.538861
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19948588 101 + 20766785
-----------GGGAGACAGGAUGUUGCCGCUGCAUAAAAACUUGUUAAAAUUUAAUAAUUUAUGGCCCUGGCCCAGACAGCGAGUAGCCCCGGUCUUGGCCAAAU--------ACACAC
-----------(((((((.((..((((((((((((((((...((((((.....)))))))))))(((....)))..).))))).))))).)).)))))..))....--------...... ( -28.90)
>DroSec_CAF1 31614 101 + 1
-----------GGGAGACAGGAUGUUGCCGCUGCAUAAAAACUUGUUAAAAUUUAAUAAUUUAUGGCCCUGGCCCAGACAGCGAGUAGCCCCGGUCUUGGCCAAAU--------ACACAC
-----------(((((((.((..((((((((((((((((...((((((.....)))))))))))(((....)))..).))))).))))).)).)))))..))....--------...... ( -28.90)
>DroSim_CAF1 33883 101 + 1
-----------GGGAGACAGGAUGUUGCCGCUGCAUAAAAACUUGUUAAAAUUUAAUAAUUUAUGGCCCUGGCCCAGACAGCGAGUAGCCCCGGUCUUGGCCAAAU--------ACACAC
-----------(((((((.((..((((((((((((((((...((((((.....)))))))))))(((....)))..).))))).))))).)).)))))..))....--------...... ( -28.90)
>DroEre_CAF1 30689 101 + 1
-----------GGGAGACAGGAUGUUGCCGCUGCAUAAAAACUUGUUAAAAUUUAAUAAUUUAUGGCCCUGGCCCAGACAGCGAGUAGCCCCGGUCUUGGCCAAAA--------ACACAC
-----------(((((((.((..((((((((((((((((...((((((.....)))))))))))(((....)))..).))))).))))).)).)))))..))....--------...... ( -28.90)
>DroYak_CAF1 29363 120 + 1
ACAGAGCGACAGGGAGACAGGAUGUUGCCGCUGCAUAAAAACUUGUUAAAAUUUAAUAAUUUAUGGCCCUGGCCCAGACAGCGAGUAGCCCCGGUCUUGGCCAAAUACUCGUACACACAC
.(((.((((((.(....)....))))))..)))((((((...((((((.....))))))))))))....(((((.((((.((.....))....)))).)))))................. ( -31.60)
>DroAna_CAF1 30675 93 + 1
-----------GGAAGACAGGAUGUUGCCGUUGCAUAAAAACUUGUUAAAAUUUAAUAAUUUAUGGCCCUGGCCCAGACAGUGAGUAGCCC------UGGCCAAAU--------AC--AU
-----------((....((((..((((((((((((((((...((((((.....)))))))))))(((....)))..).))))).)))))))------)).))....--------..--.. ( -19.90)
>consensus
___________GGGAGACAGGAUGUUGCCGCUGCAUAAAAACUUGUUAAAAUUUAAUAAUUUAUGGCCCUGGCCCAGACAGCGAGUAGCCCCGGUCUUGGCCAAAU________ACACAC
...........(((((((.((..((((((((((((((((...((((((.....)))))))))))(((....)))..).))))).))))).)).)))))..)).................. (-25.22 = -25.63 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:18 2006