Locus 6362

Sequence ID 2R_DroMel_CAF1
Location 19,944,653 – 19,944,759
Length 106
Max. P 0.585481
window10162

overview

Window 2

Location 19,944,653 – 19,944,759
Length 106
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 72.22
Mean single sequence MFE -23.24
Consensus MFE -3.90
Energy contribution -4.98
Covariance contribution 1.08
Combinations/Pair 1.24
Mean z-score -1.58
Structure conservation index 0.17
SVM decision value 0.10
SVM RNA-class probability 0.585481
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19944653 106 - 20766785
ACGUUCGCUUGAAACUUGGAAUUUUAAACGGCUGGGGAGGAAAGCGAUAGUUUUUAUUGCUUAGCCGAUGCUAUUAUAUUUUUAGCUCUCAAUUACCACGGAGACU
................(((.........((((((((.((((((((....)))))).)).))))))))..((((.........)))).........))).(....). ( -24.10)
>DroSec_CAF1 27739 88 - 1
ACGUUCGCUUUAAACUUGGAAUUUAAAA----------------CGAUAGUUUUUAUUGCUUAACCGAGGCUAUUAUAU--UUAGCUCUCAGUUACCAGCGAACCU
..(((((((........(.(((..((((----------------(....))))).))).).((((.(((((((......--.)))).))).))))..))))))).. ( -23.00)
>DroSim_CAF1 28187 88 - 1
ACGUUCGCUUUAAACUUGGAAUUUAAAA----------------CGAUAGUUUUUAUUACUUAAACGAGGCUAUUAUAU--UUAGCUCUCAGUUACCAGCGAAACU
...((((((...((((...(((..((((----------------(....))))).)))........(((((((......--.)))).)))))))...))))))... ( -18.20)
>DroEre_CAF1 26776 100 - 1
AUAUUCGCUCGCAACUUGGGGCUUAGAAUGGCU-GC---GAGAGCGAUAGUUUUUAUUACUUAACCGGCGCUACUAUAU--GUAGUGUUCAAUUAUCGCCGCAACU
..........((..((((.((((......))))-.)---))).(((((((((.(((.....)))..((((((((.....--)))))))).))))))))).)).... ( -29.70)
>DroYak_CAF1 25304 101 - 1
AUAUUCGCCUGAAACUUGCAACUUAGAACGGCUCGG---GAUAGUGAUAGCUUGUAUUACUUGACCGAGGCUACUAUUU--GUACUGCUCAAUUAUCCCCGAAACU
...((((..........(((((.(((...(.(((((---...(((((((.....)))))))...))))).)..)))...--))..)))...........))))... ( -21.20)
>consensus
ACGUUCGCUUGAAACUUGGAAUUUAAAA_GGCU_G____GA_AGCGAUAGUUUUUAUUACUUAACCGAGGCUAUUAUAU__UUAGCUCUCAAUUACCACCGAAACU
...((((....................................((((((.....))))))......(((((((.........)))).))).........))))... ( -3.90 =  -4.98 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:12 2006