Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,942,177 – 19,942,267 |
Length | 90 |
Max. P | 0.895446 |
Location | 19,942,177 – 19,942,267 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 92.56 |
Mean single sequence MFE | -17.35 |
Consensus MFE | -14.79 |
Energy contribution | -15.02 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.09 |
Mean z-score | -2.09 |
Structure conservation index | 0.85 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.895446 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19942177 90 + 20766785 UUGAAUUUGCAAACAAAUUUACACGAAUUUGAUUAUUAUUAUGAUGGCAAUUUGCAAAAAUGUCAUCCUUCAAGCAAAAAGGCAAAAGGA .(((.(((((((((((((((....)))))))(((((....))))).....))))))))....)))(((((...((......))..))))) ( -16.80) >DroPse_CAF1 24740 88 + 1 UUGAAUUUGCUAACAAAUUUACACGAAUUUGAUUAUUAUUAUGAUGGCAAUUUGCAAAAAUGUCAUCCCUCAAGCAAGA--GCAAACGAA (((..((((((..(((((((....)))))))...........(((((((.(((....)))))))))).....)))))).--.)))..... ( -18.50) >DroSec_CAF1 25294 90 + 1 UUGAAUUUGCAAACAAAUUUACACGAAUUUGAUUAUUAUUAUGAUGGCAAUUUGCAAAAAUGUCAUCCUUCAAGCGAAAAGGCAAAAGGA .(((.(((((((((((((((....)))))))(((((....))))).....))))))))....)))(((((...((......))..))))) ( -17.00) >DroEre_CAF1 24344 90 + 1 UUGAAUUUGCAAACAAAUUUACACGAAUUUGAUUAUUAUUAUGAUGGCAAUUUGCAAAAAUGUCAUCCUUCGAGCAAAAAGGCAAAAGGA .(((.(((((((((((((((....)))))))(((((....))))).....))))))))....)))(((((...((......))..))))) ( -16.80) >DroAna_CAF1 23210 82 + 1 UUGAAUUUGCAAACAAAUUUACACGAAUUUGAUUAUUAUUAUGAUGGCAAUUUGCAAAAAUGUCAUCUUUCAAGC--------AAAAGGA .....(((((...(((((((....)))))))...........(((((((.(((....))))))))))......))--------))).... ( -16.50) >DroPer_CAF1 24582 88 + 1 UUGAAUUUGCUAACAAAUUUACACGAAUUUGAUUAUUAUUAUGAUGGCAAUUUGCAAAAAUGUCAUCCCUCAAGCAAGA--GCAAACGAA (((..((((((..(((((((....)))))))...........(((((((.(((....)))))))))).....)))))).--.)))..... ( -18.50) >consensus UUGAAUUUGCAAACAAAUUUACACGAAUUUGAUUAUUAUUAUGAUGGCAAUUUGCAAAAAUGUCAUCCUUCAAGCAAAA__GCAAAAGGA .....(((((...(((((((....)))))))...........(((((((.(((....))))))))))......)))))............ (-14.79 = -15.02 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:09 2006