| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,196,907 – 3,196,999 |
| Length | 92 |
| Max. P | 0.569953 |
| Location | 3,196,907 – 3,196,999 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 75.24 |
| Mean single sequence MFE | -27.33 |
| Consensus MFE | -16.58 |
| Energy contribution | -15.38 |
| Covariance contribution | -1.19 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.569953 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3196907 92 - 20766785 CCUUAAGCGUUCGAUGUGGCUGGAAGAGCUGCACCUGGAGGCAUUGGGCUUAAGGUA-AGGA---UUG--GUAUA-----UGUCAGUUGGAUAG-CAUUGAUAA ((((((((..(((((((..(..(...........)..)..)))))))))))))))..-...(---(..--((...-----((((.....)))).-.))..)).. ( -24.20) >DroGri_CAF1 5327 87 - 1 GCUCAGGCGCUCCAUGUGGCUGGAAGAGCUGCAUCUGGAGGCACUAGGUUUAAGGUG-AGCACGC--A--AUACA-----UCUAA-----AUAUACAUUAAU-- ((((..((.(((((((..(((.....)))..))..)))))))(((........))))-)))....--.--.....-----.....-----............-- ( -24.20) >DroSec_CAF1 4111 93 - 1 CCUUAAGCGUUCGAUGUGGCUGGAAGAGCUGCACCUGGAGGCAUUGGGCUUAAGGUACGGGA---UUG--UCAUA-----AGUCAGUGGGAUAG-CAUUGAUAU ((((((((..(((((((..(..(...........)..)..))))))))))))))).......---...--.....-----.(((((((......-))))))).. ( -26.70) >DroSim_CAF1 4186 92 - 1 CCUUAAGCGUUCGAUGUGGCUGGAAGAGCUGCACCUGGAGGCAUUGGGCUUAAGGUA-GGGA---UCG--GUAUA-----AGUCAGUGGGAUAU-UAUUGAUAU ((((((((..(((((((..(..(...........)..)..)))))))))))))))..-...(---(((--(((..-----.(((.....)))..-))))))).. ( -25.50) >DroEre_CAF1 4051 90 - 1 CCUUAAGCGUUCGAUGUGGCUGGAAGAGCUGCACCUGGAAGCAUUGGGCUUAAGGUA-GGGA---UUG--UAAUA-----UUUUUGUAGGAUAG-CUUUGAU-- ((((((((..(((((((..(..(...........)..)..)))))))))))))))((-(((.---(((--(..((-----(....)))..))))-)))))..-- ( -24.40) >DroPer_CAF1 4499 97 - 1 GCUCAAGCGCUCGAUGUGGCUGGAGGAGCUGCAUCUGGAGGCGUUAGGCUUAAGGUG-AGCA---UUCAGCCACAUUCCGAGUAAUCUGCGUGA-CACUGAU-- ..(((.((((((((((((((((((...(((.(((((.(((.(....).))).)))))-))).---)))))))))))..))))).....)).)))-.......-- ( -39.00) >consensus CCUUAAGCGUUCGAUGUGGCUGGAAGAGCUGCACCUGGAGGCAUUGGGCUUAAGGUA_AGGA___UUG__GUAUA_____AGUCAGUGGGAUAG_CAUUGAU__ (((............(..(((.....)))..)((((..((((.....)))).))))..)))........................................... (-16.58 = -15.38 + -1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:21 2006