Locus 6356

Sequence ID 2R_DroMel_CAF1
Location 19,930,897 – 19,930,992
Length 95
Max. P 0.790228
window10154

overview

Window 4

Location 19,930,897 – 19,930,992
Length 95
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 77.30
Mean single sequence MFE -33.40
Consensus MFE -24.80
Energy contribution -23.63
Covariance contribution -1.17
Combinations/Pair 1.27
Mean z-score -1.20
Structure conservation index 0.74
SVM decision value 0.58
SVM RNA-class probability 0.790228
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19930897 95 + 20766785
UGACCAUCUCGGGCGUCAUCUCGAUUCCGGCGGACAAGCGACUGUUGGCGUAAAAAAUGCUGAAGUCGCUCAGCCUGCAAAA----------------UGGGU-UUC--CCCGG
...((....((((((((...(((....)))..))).(((((((.(..((((.....))))..))))))))..))))).....----------------.(((.-...--))))) ( -33.60)
>DroPse_CAF1 14579 106 + 1
UCACCAUCUCAGGCGUCAUCUCGAUGCCAGCCGAGAGGCGGCUGUUGGCAUAAAAUAUGCUAAGGUCGCUCAGCCUGCAAAC-AA--CCAU---GAAAUCAUUCGUC--CCCUG
.........(((((....(((((........)))))(((((((.((((((((...)))))))))))))))..))))).....-..--..((---(((....))))).--..... ( -31.60)
>DroYak_CAF1 11380 111 + 1
UGACCAUCUCGGGCGUCAUCUCGAUUCCGGCGGACAAGCGGCUGUUGGCGUAAAAUAUGCUGAAGUCGCUCAGCCUGCAAAAUGGCCAAAUGGCGAAAUGGGU-UUC--CCCGG
...((((.(((((((((...(((....)))..))).(((((((.(..(((((...)))))..))))))))..))))........(((....))))).))))..-...--..... ( -37.90)
>DroMoj_CAF1 16165 99 + 1
UGACCAUCUCGGGCGUCAUCUCGAUGCGCGCCGCAAGGCGACUGUUCGCAUAAAAUAUGCUAAAGUCGCUCAGCCUGCAAAG-UG--CCAU---UAAAUUGA--GUU-------
.......((((.(((((.....))))).)((.((..(((((((....(((((...)))))...)))))))..))..))....-..--....---......))--)..------- ( -29.50)
>DroAna_CAF1 12392 110 + 1
UGACCAUCUCGGGCGUCGACUCGAUUCCGGCGGACAGGCGACUGUUGGCGUAAAAUAUGCUGAAGUCGCUCAGCCUGCAAAAUAGAGAAAUU---AAAUUACU-UCCCUCCCGA
......((((.((.((((...)))).)).((((...(((((((.(..(((((...)))))..))))))))...)).))......))))....---........-.......... ( -31.10)
>DroPer_CAF1 14625 106 + 1
UCACCAUCUCGGGCGUCAUCUCGAUGCCAGCCGAGAGGCGGCUGUUGGCAUAAAAUAUGCUAAGGUCGCUCAGCCUGCAAAC-AG--CCAU---GAAAUCAUUCGUC--CCCUG
...........((((((.....)))))).(((....)))(((((((((((((...)))))).((((......))))...)))-))--))((---(((....))))).--..... ( -36.70)
>consensus
UGACCAUCUCGGGCGUCAUCUCGAUGCCGGCCGACAGGCGACUGUUGGCAUAAAAUAUGCUAAAGUCGCUCAGCCUGCAAAA_AG__CCAU___GAAAUCAGU_GUC__CCCGG
.........((((((((.....)))...........(((((((.(((((((.....))))))))))))))..)))))..................................... (-24.80 = -23.63 +  -1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:03 2006