| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,923,518 – 19,923,613 |
| Length | 95 |
| Max. P | 0.939172 |
| Location | 19,923,518 – 19,923,613 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 68.25 |
| Mean single sequence MFE | -23.88 |
| Consensus MFE | -11.43 |
| Energy contribution | -11.48 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.48 |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.939172 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19923518 95 - 20766785 CAAUGGGGUAAUGAUAACUCCUUCAAUAACAACCACUAU-------UG----ACUAUCUUUCAGCGCGCGACGCACUCCGCCCAGGGGCGCACCUCCACCCCCUCC ....(((((..(((........((((((........)))-------))----).......)))(((((...))).....(((....)))))......))))).... ( -23.26) >DroSec_CAF1 3909 94 - 1 CAAUGGGGCAAUGAUAACUCCCCCACUAAAAACAACUAU-------C-----ACCAUCUUUCAGCGCGCGACGCACGCCGCCCAGGGGCGCACCUCCGCCCCCUCC .....((((..(((((....................)))-------)-----)..........(((.((...)).))).)))).((((((......)))))).... ( -26.45) >DroSim_CAF1 3931 94 - 1 CAAUGGGGCAAUGAUAACUUCCCCACUAACAACAACUAU-------C-----ACCAUCUUUCAGCGCGCGACGCACGCCGCCCAGGGGCGCACCUCCGCCCCCUCC .....((((..(((((....................)))-------)-----)..........(((.((...)).))).)))).((((((......)))))).... ( -26.45) >DroYak_CAF1 3884 88 - 1 CAAUGGGCUAAUGGGAGCUCCCCC------AAUAAUUUU-------C-----UCCAUCUUUCAGCGCCCGACGCACGCCGCCCAGGGGCGCCCCUCCGCCCCCUCC ...(((((...((((......)))------)........-------.-----...........(((.....))).....)))))((((((......)))))).... ( -30.20) >DroMoj_CAF1 5665 89 - 1 -------CAGAUAAUAACAC--UAACUAAUAACAAUUUU-------UAAAUUUCCA-UUUGCAGCGCACGUCGCACUCCGCCACGCGGUGCGCCGCCUCCGCCACC -------.............--.................-------..........-...((.((((((..(((..........))))))))).)).......... ( -15.30) >DroAna_CAF1 5169 101 - 1 UAAUCCGCUAAUGAAAACCGUCCAAAUGACAAUUGAUUUUUUUUUGU-----GUUACAUUUCAGCGCUCGGCGUACUCCGCCCCGCGGUGCUCCGCCGCCACCGCC .....((((((((......(((.....)))...((((..........-----))))))))..))))...((((.....))))..(((((((......).)))))). ( -21.60) >consensus CAAUGGGCUAAUGAUAACUCCCCCACUAACAACAACUAU_______C_____ACCAUCUUUCAGCGCGCGACGCACGCCGCCCAGGGGCGCACCUCCGCCCCCUCC ...............................................................(((.....)))..........((((((......)))))).... (-11.43 = -11.48 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:02 2006