Locus 6354

Sequence ID 2R_DroMel_CAF1
Location 19,921,027 – 19,921,147
Length 120
Max. P 0.653931
window10152

overview

Window 2

Location 19,921,027 – 19,921,147
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.61
Mean single sequence MFE -45.42
Consensus MFE -24.78
Energy contribution -24.37
Covariance contribution -0.41
Combinations/Pair 1.42
Mean z-score -1.97
Structure conservation index 0.55
SVM decision value 0.25
SVM RNA-class probability 0.653931
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19921027 120 - 20766785
CAGGCUGUAUAUGUGCGAUGUUAUAAGAUGAACGUGCGUUGCUGCCGGCUUAGUGGCAAUCACAUGUGAAAUGUCCGCCGCCAAGGGAUAAACGCCCGCCUGGUGGAUGAAGCCAAAGAA
..((((.((((((((((((((..............)))))))(((((......)))))...)))))))....((((((((....(((.......)))...))))))))..))))...... ( -39.64)
>DroVir_CAF1 1479 120 - 1
CAAGCUGUAGGUGUGCGAGGUAAGCAGAUGGACAUGGGUGGCCGCCGGCUUGGUGGCCACCACAUGCGACAUAUGCUGUGCCAGCGGAAAGAUGCCAGCCUGAUGAAUGAAGCCAAAGAA
...(((.(((((..((..((((((((.(((..((((((((((((((.....)))))))))).))))...))).)))).)))).))((.......)).)))))........)))....... ( -48.40)
>DroGri_CAF1 1829 120 - 1
CAGGCUGUACAUGUGUGAGGUGAGCAGAUGGACAUGGGUCGCCGUCGGUUUAGUAGCCACCACAUGCGACAUCCGCUGUGCCAGCGGAAACAUACCCGCUUGAUGGAUGAAGCCAAAGAA
..((((...(((.(((.(((((.(((..(((..((((....)))).((((....)))).)))..)))....(((((((...)))))))........))))).))).))).))))...... ( -41.40)
>DroMoj_CAF1 1827 120 - 1
CAGGCUGUAAGUGUGCGAGGUGAGCAGAUGGACAUGGGUGGCCAUCGGCUUUGUGGCCACCACAUGCGCCAUGCGCUGGGCCAGCGGAAAGAUGCCCGCCUGAUGUAUGAAUCCAAAGAA
(((((....(((((((.......))..((((.(((((((((((((.......))))))))).))))..)))))))))((((...(.....)..))))))))).................. ( -47.70)
>DroAna_CAF1 1468 120 - 1
CAAGCUGUACAUGUGCGAGGUCAUCAGGUGGAUGUGCGUGGCCGCCGGCUUUGUGGCCACCACAUGCGACAUAUCCACAGCUAGAGGAUAAAGCCCCGCUUGGUGGAUGAAGCCGAAGAA
...((((((....)))....((((((((((((((((.((((((((.......)))))))))))))((....(((((.(.....).)))))..)).)))))))))))....)))....... ( -45.20)
>DroPer_CAF1 4798 120 - 1
CAGACUGUAAAUGUGCGAGGUCAUUAGGUGAACGUGGGUGGCCGCUGGCUUGGUGGCCAUCACAUGGGCCAUGGUCUCGGCCAGCGGAUAAAUACCCGCCUGAUGAAUGAAGCCAAAGAA
...........((.((....((((((((....)(((((((.((((((((((.((((((........)))))).)....))))))))).....)))))))))))))).....))))..... ( -50.20)
>consensus
CAGGCUGUAAAUGUGCGAGGUCAGCAGAUGGACAUGGGUGGCCGCCGGCUUAGUGGCCACCACAUGCGACAUGUGCUCGGCCAGCGGAAAAAUGCCCGCCUGAUGGAUGAAGCCAAAGAA
(((((.............(((......(((..(((((((((((((.......))))))))).))))...))).......)))...((........))))))).................. (-24.78 = -24.37 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:01 2006