Locus 6353

Sequence ID 2R_DroMel_CAF1
Location 19,919,430 – 19,919,528
Length 98
Max. P 0.561168
window10151

overview

Window 1

Location 19,919,430 – 19,919,528
Length 98
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 85.37
Mean single sequence MFE -17.70
Consensus MFE -12.76
Energy contribution -13.07
Covariance contribution 0.31
Combinations/Pair 1.06
Mean z-score -1.49
Structure conservation index 0.72
SVM decision value 0.05
SVM RNA-class probability 0.561168
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19919430 98 - 20766785
UAAGAUCUAAAA-AUUAAAAACAGACAACUAUUUGUUUUGCCAACGCAUUUGUGCGAAUGGCAACCUAGGGUGACCCACUAAAUGCCAUGAA-AAAAUAC
............-....((((((((......)))))))).....((((....)))).((((((.....((....)).......))))))...-....... ( -19.80)
>DroSec_CAF1 8801 96 - 1
UAAGAUCUAAAAAAUCAACAACA---AACUAUUUGUUUUGCCAACGCAUUUGUGCGAAUGGCAACCUAGGGUGACCCACUCAAUUCCAUGAA-AAAAUAC
..............(((..((((---(.....)))))((((((.((((....))))..))))))....((....))............))).-....... ( -17.20)
>DroSim_CAF1 10202 96 - 1
UAAGAUCUAAAAAAUCAACAACA---AACUAUUUGUUUUGCCAACGCAUUUGUGCGAAUGGCAACCUAGGGUGACCCACUGAAUUCCAUGAA-AAAAUAC
..............(((..((((---(.....)))))((((((.((((....))))..))))))....((....))............))).-....... ( -17.20)
>DroYak_CAF1 8925 97 - 1
UAAGUUCUAACAAUUCAACAAAA---GUUUAUUUGUUUUGCUAACGCAUUUGUGCGAAUGGCACCCUAGUGUGACCAAAUCGGAUCUAUAUACUAAAUAC
..(((...(((((...(((....---)))...)))))..)))..((((((.((((.....))))...)))))).((.....))................. ( -16.60)
>consensus
UAAGAUCUAAAAAAUCAACAACA___AACUAUUUGUUUUGCCAACGCAUUUGUGCGAAUGGCAACCUAGGGUGACCCACUCAAUUCCAUGAA_AAAAUAC
.............................(((((...((((((.((((....))))..))))))....((....))..................))))). (-12.76 = -13.07 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:00 2006