Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,918,346 – 19,918,436 |
Length | 90 |
Max. P | 0.831487 |
Location | 19,918,346 – 19,918,436 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -36.33 |
Consensus MFE | -34.05 |
Energy contribution | -33.55 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.15 |
Mean z-score | -1.81 |
Structure conservation index | 0.94 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.831487 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19918346 90 + 20766785 CGCCCGCCCCGCCCCCUGCCUCCGCACAAGUGGGCGCUGCUGUGGGCGUGGCCCAUUAGGAGCGCCUAGUUUGCCACAUUACUAUCCUGA .((((((..((((((.(((....)))...).))))).....))))))(((((..((((((....))))))..)))))............. ( -36.80) >DroSec_CAF1 7741 90 + 1 CGCCCGCCCCGCCCCCUGCCUCCGCACAAGUGGGCGCUGCUGUGGGCGUGGCCCAUUAGGAGCGCCUAGUUUGCCACAUUACUAUCCUGA .((((((..((((((.(((....)))...).))))).....))))))(((((..((((((....))))))..)))))............. ( -36.80) >DroSim_CAF1 9122 90 + 1 CGCCCGCCCCGCCCCCUGCCUCCGCACAAGUGGACGCUGCUGUGGGCGUGGCCCAUUAGGAGCGCCUAGUUUGCCACAUUACUAUCCUGA .((((((...((.....((.(((((....))))).)).)).))))))(((((..((((((....))))))..)))))............. ( -36.40) >DroYak_CAF1 7788 90 + 1 CGCCCGCCCCGCCCUCUGCCUUCGCACAAGUGGGCGUUGUUGUGGGCGUGGCCCAUUAGGAGCGCCUAGCCUGCCACAUUACUAUCCUGA .((((((..(((((.((((....))...)).))))).....))))))(((((...(((((....)))))...)))))............. ( -35.30) >consensus CGCCCGCCCCGCCCCCUGCCUCCGCACAAGUGGGCGCUGCUGUGGGCGUGGCCCAUUAGGAGCGCCUAGUUUGCCACAUUACUAUCCUGA .((((((...((.....((.(((((....))))).)).)).))))))(((((..((((((....))))))..)))))............. (-34.05 = -33.55 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:59 2006