Locus 6350

Sequence ID 2R_DroMel_CAF1
Location 19,914,492 – 19,914,608
Length 116
Max. P 0.902910
window10147

overview

Window 7

Location 19,914,492 – 19,914,608
Length 116
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 73.34
Mean single sequence MFE -27.55
Consensus MFE -18.03
Energy contribution -19.17
Covariance contribution 1.14
Combinations/Pair 1.12
Mean z-score -1.49
Structure conservation index 0.65
SVM decision value 1.03
SVM RNA-class probability 0.902910
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19914492 116 + 20766785
GUCUGAAAGACCCUUCGAAAAGAAGCUAUCGAGAACUCACCCCAAAACGGAGAAGAUGACAAAGCCGGCCAGGAAACUGGUCAAGCAGUUGAUGCUGCUGGUGAUGAGAGCAUCGC
.((((...((..((((.....))))...))((....)).........))))...((((.((..(((((((((....)))))).((((((....)))))))))..))....)))).. ( -36.50)
>DroSim_CAF1 5103 116 + 1
AUCUGAAAGACCCUUUGAAGAGAAGCUAUUGAGAACUCACCCCAAAACGGAGAAGAUGACAAAGCCGGCCAGGAAACUGGUCAGGCAGUUGAUGCUGCUGGUGAUGAGGGCAUCGC
.((((((((...))))...(((...((....))..))).........))))...((((.((..(((((((((....)))))).((((((....)))))))))..))....)))).. ( -34.40)
>DroEre_CAF1 3788 92 + 1
AUGUGAAA------------------------GAACUCACCCCAAAACGGAGAAGAUGACAAAGCCGGCCAGGAAGCUGGUCAGGCAGUUGAUGCUGCUGGUGAUGAGGGCAUCCC
..((((..------------------------....)))).((.....))....((((.((..(((((((((....)))))).((((((....)))))))))..))....)))).. ( -29.60)
>DroWil_CAF1 12099 92 + 1
AUCUCAG------------------------UGUACUCACCCCAAUACUGAGAAGAUGACAAAUCCGGCCAGGAAACUCGUCAAACAAUUAAUACUACUCGUUAUAAGAGCAUCUC
.((((((------------------------(((..........)))))))))(((((........(((.((....)).)))...............(((.......)))))))). ( -23.10)
>DroYak_CAF1 3732 92 + 1
AUCUGAAG------------------------AGACUCACCCCAAGACGGAGAAGAUGACAAAGCCGGCGAGGAAGCUGGUCAGGCAGUUGAUGCUGCUGGUGAUGAGGGCAUCCC
........------------------------....(((((((.....)).............((((((......))))))..((((((....)))))))))))...(((...))) ( -25.00)
>DroAna_CAF1 3722 94 + 1
U--------------UGAAAGG--------AAGAACUCACCCCAAAACUGAAAAUAUUACAAACCCAGCCAGAAAACUGGUCAGGCAAUUGAUGCUGCUGGUGAUUAGAGCAUCUC
.--------------.....((--------...........))....................((..(((((....)))))..)).....((((((.(((.....))))))))).. ( -16.70)
>consensus
AUCUGAAA_______________________AGAACUCACCCCAAAACGGAGAAGAUGACAAAGCCGGCCAGGAAACUGGUCAGGCAGUUGAUGCUGCUGGUGAUGAGAGCAUCCC
....................................(((((.........................((((((....)))))).((((((....)))))))))))............ (-18.03 = -19.17 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:56 2006