Locus 6347

Sequence ID 2R_DroMel_CAF1
Location 19,909,933 – 19,910,031
Length 98
Max. P 0.730993
window10144

overview

Window 4

Location 19,909,933 – 19,910,031
Length 98
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 81.35
Mean single sequence MFE -36.56
Consensus MFE -19.71
Energy contribution -21.05
Covariance contribution 1.34
Combinations/Pair 1.14
Mean z-score -2.51
Structure conservation index 0.54
SVM decision value 0.42
SVM RNA-class probability 0.730993
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19909933 98 - 20766785
UAAACGGCCAUUUUUCGC---------------CGGCGCUGCCAGAUCGCCAAACAGGGUGCAAUUGCAGCUCAGUGGCAACACGA--AGCGUUUGCGCGAGAGAAAUUUCCAA-G
.....((..(((((((..---------------.(((...)))...(((((((((....(((....)))(((..(((....)))..--)))))))).)))))))))))..))..-. ( -35.30)
>DroVir_CAF1 188026 109 - 1
GAUACG-CCAUUUUGGUCAUCAGAAUAUGCAAUGCGCGUUGCCAUAUCGUCA----CUGUGGAAUUUAAG--AACUGGUCACACUGGCUGGCAUUGCGCGAGAGAAAUUGACAAAA
.....(-(.((((((.....))))))..))..((((((.(((((....((((----.(((((........--......))))).))))))))).))))))................ ( -27.44)
>DroSec_CAF1 143218 98 - 1
UAAACGGCCAUUUUUCGG---------------CGGCGCUGCCAGAUCGCCAAACAGGGUGCAAUUGCAGCUCAGUGGCAACACGA--AGCGUUUGCGCGAGAGAAAUUUCCAA-G
.....((..(((((((((---------------((....))))...(((((((((....(((....)))(((..(((....)))..--)))))))).)))))))))))..))..-. ( -37.90)
>DroSim_CAF1 121555 98 - 1
UAAACGGCCAUUUUUCGG---------------CGGCGCUGCCAGAUCGCCAAACAGGGUGCAAUUGCAGCUCAGUGGCAACACGA--AGCGUUUGCGCGAGAGAAAUUUCCAA-G
.....((..(((((((((---------------((....))))...(((((((((....(((....)))(((..(((....)))..--)))))))).)))))))))))..))..-. ( -37.90)
>DroEre_CAF1 147494 98 - 1
UAAACGGCCAUUUUUGGC---------------CGGCGCUGCCAGAUCGCCGAACAGGGUGCAAUUGCAGCUCAGUGGCAACACGA--AGCGUUUGCGCGAGAGAAAUUUCCAA-G
....((((((....))))---------------))(((((((.....((((......)))).....)))(((..(((....)))..--)))....))))((((....))))...-. ( -39.40)
>DroYak_CAF1 145755 98 - 1
UAAACGGCCAUUUUUGGC---------------CGGCGCUGCCAGAUCGGCAAACAGGGUGCAAUUGCAGCUCAGUGGCAACACGA--AGCGUUUGCGCGAGAGAAAUUUCUAA-G
....((((((....))))---------------))((((.(((.....)))((((....(((....)))(((..(((....)))..--)))))))))))((((....))))...-. ( -41.40)
>consensus
UAAACGGCCAUUUUUCGC_______________CGGCGCUGCCAGAUCGCCAAACAGGGUGCAAUUGCAGCUCAGUGGCAACACGA__AGCGUUUGCGCGAGAGAAAUUUCCAA_G
.....((..((((((...................(((...)))...(((((((((....(((....)))(((..(((....)))....)))))))).)))).))))))..)).... (-19.71 = -21.05 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:53 2006