| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,899,106 – 19,899,204 |
| Length | 98 |
| Max. P | 0.724646 |
| Location | 19,899,106 – 19,899,204 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 84.23 |
| Mean single sequence MFE | -21.88 |
| Consensus MFE | -15.26 |
| Energy contribution | -16.95 |
| Covariance contribution | 1.69 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.724646 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19899106 98 - 20766785 CCUAAUCCGAGCUGAGCCUCC---------ACCCAUCCGCAUCCUCCUGCUC-CUGUGCCCCGGCGGCACAGAGCUCUUACU---------CAUCUUUCCUUUUGCAUUGUCCAUUU ........(((..((((....---------........(((......)))..-(((((((.....))))))).))))...))---------)......................... ( -23.00) >DroSec_CAF1 132496 99 - 1 CCUAAUCCGAGCUGGGCCUCG---------CCCCAUCCGCAUCCUCCGGCUCCCUGUGCCCCGGCGGCACAGAGCUCUUACU---------CAUCUUUCCUUUUGCAUUGUCCAUUU ........(((((((((...)---------)))...(((.......)))....(((((((.....)))))))))))).....---------.......................... ( -25.10) >DroSim_CAF1 110730 99 - 1 CCUAAUCCGAGCUGGGCCUCG---------CCCCAUCCGCAUCCUCCGGCUCCCUGUGCCCCGGCGGCACAGAGCUCUUACU---------CAUCUUUCCUUUUGCAUUGUCCAUUU ........(((((((((...)---------)))...(((.......)))....(((((((.....)))))))))))).....---------.......................... ( -25.10) >DroYak_CAF1 134806 109 - 1 CCUAAUCCGAGCUGGCCCUCCUCACCCAUCCUCCAUCCGCAUCCUCCUGGU--------CCCGGCGGCACAGAGCUCUUACUCAUCUUACUCAUCUUUCCUUUUGCAUUGUCCAUUU ........(((((((....))...............((((..((....)).--------....)))).....)))))........................................ ( -14.30) >consensus CCUAAUCCGAGCUGGGCCUCC_________CCCCAUCCGCAUCCUCCGGCUC_CUGUGCCCCGGCGGCACAGAGCUCUUACU_________CAUCUUUCCUUUUGCAUUGUCCAUUU ........((((((((((.............................))))).(((((((.....))))))))))))........................................ (-15.26 = -16.95 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:47 2006