Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,889,724 – 19,889,818 |
Length | 94 |
Max. P | 0.631212 |
Location | 19,889,724 – 19,889,818 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 88.72 |
Mean single sequence MFE | -24.92 |
Consensus MFE | -17.06 |
Energy contribution | -17.02 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.12 |
Mean z-score | -2.17 |
Structure conservation index | 0.68 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.631212 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19889724 94 + 20766785 GCCGAUU-------GCCAAUGGCACACAUAAAUUGAAACAAGUCCAGCGGUCAAAGAGAUACGUAUCUUUUGAAAAUGCAAU-------UCUGGCAUUUGUUUCAUUU ((((...-------.....))))..........((((((((((((((((.((((.(((((....)))))))))...)))...-------..))).))))))))))... ( -24.20) >DroSec_CAF1 123278 92 + 1 GCCGAUU-------GCCAAUGGCACACAUAAAUUGAAACAAGUCCAGCGGUCAACGAGAUACGUAUCUUU--AAAAUGCAAU-------UCUGGCACUCGUUUCAAUU ((((...-------.....)))).......(((((((((.(((((((..((....(((((....))))).--.....))...-------.)))).))).))))))))) ( -22.00) >DroSim_CAF1 100649 92 + 1 GCCGAUU-------GCCAAUGGCACACAUAAAUUGAAACAAGUCCAGCGGUCAAAGAGAUACGUAUCUUU--AAAAUGCAAU-------UCUGGCACUCGUUUCAAUU ((((...-------.....)))).......(((((((((.(((((((..((...((((((....))))))--.....))...-------.)))).))).))))))))) ( -22.80) >DroEre_CAF1 125700 92 + 1 GCCGAUU-------GCCAAUGGCACACAUAAAUUGAAACCAGUGCAGUGGUCAAAGAGAUACGUAUCUUU--AAAAUGCAAU-------UCUGGCACUCGUUUCAAUU ((((...-------.....)))).......(((((((((.(((((((..((...((((((....))))))--.....))...-------.)).))))).))))))))) ( -23.30) >DroYak_CAF1 124436 106 + 1 GCCGAUGGCCGGUGGCCAAUGGCACACAUAAAUUGAAACAAGUUCGGCGGUCAAAGAGAUACGUAUCUUU--AAAAUGCUUUUCUGGUUUCUGGCACUCGUUUCAAUU ((((.(((((...))))).)))).......(((((((((.(((((((.(..(((((((.....((....)--).....))))).))..).)))).))).))))))))) ( -32.30) >consensus GCCGAUU_______GCCAAUGGCACACAUAAAUUGAAACAAGUCCAGCGGUCAAAGAGAUACGUAUCUUU__AAAAUGCAAU_______UCUGGCACUCGUUUCAAUU ..............(((...))).......(((((((((.(((((((..(((.....)))..((((.........))))...........)))).))).))))))))) (-17.06 = -17.02 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:46 2006