Locus 6341

Sequence ID 2R_DroMel_CAF1
Location 19,884,975 – 19,885,065
Length 90
Max. P 0.713912
window10136

overview

Window 6

Location 19,884,975 – 19,885,065
Length 90
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 82.09
Mean single sequence MFE -20.73
Consensus MFE -14.61
Energy contribution -14.53
Covariance contribution -0.08
Combinations/Pair 1.23
Mean z-score -1.83
Structure conservation index 0.70
SVM decision value 0.38
SVM RNA-class probability 0.713912
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19884975 90 - 20766785
UCUCCGCCGUCAACACUCGGCCAUAAAAGCCCACAUGGCCCAAAC---AACUAACGGCUUCCGGCUGAAG--AC---CAAGUCAACGUUGAAGACCAA
........(((.......((((((..........))))))....(---(((...((((.....))))..(--((---...)))...))))..)))... ( -20.30)
>DroSec_CAF1 118529 90 - 1
UCUCCGCCGUCAACACUCGGCCAUAAAAGCCCACAUGGCCCAAAC---AACUAACGGCUUCCGGCUGAAG--AC---CAAGUCAACGUCGAAGACCAA
(((.((.(((..((....((((((..........)))))).....---.......((((((.....))))--.)---)..))..))).)).))).... ( -21.20)
>DroSim_CAF1 95868 93 - 1
UCUCCGCCGUCAACACUCGGCCAUAAAAGCCCACAUGGCCCAAACAACAACUAACGGCUUCCGGCUGAAG--AC---CAAGUCAACUUCGAAGACCAA
(((.((..((..((....((((((..........))))))...............((((((.....))))--.)---)..))..))..)).))).... ( -18.00)
>DroEre_CAF1 120976 90 - 1
UCUCCGCCGUCAGCACUCGGCCAUAAAAGCCCACAUGGCCCAAAC---AACUAACGGCUUCCGGCUGAAC--CC---CAAGUCAAAUUCGAAGACCAA
..((.((((..(((....((((((..........)))))).....---..(....))))..)))).))..--..---...(((.........)))... ( -21.60)
>DroYak_CAF1 119483 90 - 1
UCUCCACCGUCAACACUCGGCCAUAAAAGCGCACAUGGCCCAAAC---AACUAACGGCUUCCGGCUGAAG--AC---CAAGUCAAAGUCGAAGACCAA
........(((.......((((((..........)))))).....---......((((((..((((....--..---..)))).))))))..)))... ( -21.50)
>DroAna_CAF1 112802 85 - 1
--------GUCAACACAUGGCCAUAAAAGCUUGCGGGCCCAAAAC---CCUAAACGGCUUCCGGCCGAGGUGGCUAAGAAGUAA--CCCAGAGGCUAA
--------.........(((((............(((.......)---))....((((.....)))).(((.(((....))).)--))....))))). ( -21.80)
>consensus
UCUCCGCCGUCAACACUCGGCCAUAAAAGCCCACAUGGCCCAAAC___AACUAACGGCUUCCGGCUGAAG__AC___CAAGUCAACGUCGAAGACCAA
........(((.......((((((..........))))))..............((((.....)))).........................)))... (-14.61 = -14.53 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:45 2006