Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,195,773 – 3,195,882 |
Length | 109 |
Max. P | 0.584231 |
Location | 3,195,773 – 3,195,882 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.78 |
Mean single sequence MFE | -28.52 |
Consensus MFE | -22.88 |
Energy contribution | -23.13 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.21 |
Mean z-score | -1.18 |
Structure conservation index | 0.80 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584231 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3195773 109 + 20766785 UGCUUACAUUUUCCAGCGUGAUGUCAGUCGAGGCCAGAUCCAAGUGCUCCAGCACAUUGGGUUGAGCCAGGAAAUUGUGCAAAUUCUGCAAAAAU------UGAAAUAUUUUA-----CU (((..(((.(((((....((((....)))).(((..(((((((((((....)))).)))))))..))).))))).))))))..............------............-----.. ( -31.60) >DroVir_CAF1 3707 120 + 1 CACUUACAUUUUCCAGCAUAAUAUCAGUCGAUGCCAGAUCCAGAUGCUCCAGCACAUUAGGUUGAGCCAGGAAAUUGUGCAGAUUCUGUAAAAAAAUUCGGUUGAAUAUAUUCACCUUCU ...(((((...((..((((((((((....)))......(((....((((.(((.......)))))))..))).))))))).))...)))))........(((.(((....)))))).... ( -21.50) >DroPse_CAF1 3291 106 + 1 UACAUACAUUCUCCAGCAUGAUGUCAGUCGAGGCCAGGUCCAGGUGCUCCAGCACAUUGGGUUGAGCCAGGAAAUUGUGCAGAUUCUGCGAAA---------CAAAUAGCAGA-----UU ...............(((..((.....((..(((..(..((((((((....)))).))))..)..)))..)).))..)))....(((((....---------......)))))-----.. ( -31.20) >DroYak_CAF1 3135 109 + 1 AGCUUACAUUUUCCAGCGUGAUGUCAGUCGAGGCCAGAUCUAAGUGCUCCAGUACAUUGGGUUGAGCCAGAAAGUUGUGCAAAUUCUGCAAUUAU------UUAAAUAUUUUA-----UU .(((.(((((.........))))).)))...(((..(((((((((((....)))).)))))))..)))...((((..((((.....))))...))------))..........-----.. ( -23.90) >DroAna_CAF1 3173 110 + 1 AACAUACAUUUUCCAAUGUGAUGUCAGUCGAGGCCAGGUCCAAGUGCUCCAGCACAUUGGGUUGAGCCAGGAAGUUGUGCAGAUUCUGAAAAGAA------AUGAAGAAUUUA----AUU ....((((.(((((....((((....)))).(((..(..((((((((....)))).))))..)..))).))))).)))).(((((((....(...------.)..))))))).----... ( -31.70) >DroPer_CAF1 3314 106 + 1 UACAUACAUUCUCCAGCAUGAUGUCAGUCGAGGCCAGGUCCAGGUGCUCCAGCACAUUGGGUUGAGCCAGGAAAUUGUGCAGAUUCUGCGAAA---------CAAAUAGCAGA-----UU ...............(((..((.....((..(((..(..((((((((....)))).))))..)..)))..)).))..)))....(((((....---------......)))))-----.. ( -31.20) >consensus UACAUACAUUUUCCAGCAUGAUGUCAGUCGAGGCCAGAUCCAAGUGCUCCAGCACAUUGGGUUGAGCCAGGAAAUUGUGCAGAUUCUGCAAAAA_______UUAAAUAUUUUA_____UU .....(((.(((((....((((....)))).(((..(((((((((((....)))).)))))))..))).))))).)))(((.....)))............................... (-22.88 = -23.13 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:18 2006