| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,881,645 – 19,881,753 |
| Length | 108 |
| Max. P | 0.520024 |
| Location | 19,881,645 – 19,881,753 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.90 |
| Mean single sequence MFE | -35.32 |
| Consensus MFE | -30.97 |
| Energy contribution | -30.97 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.88 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.520024 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19881645 108 - 20766785 A---------AAAAAAAAG---UUAGAUGCGCCCCCGGGUGGACUCGAACCACCAACCUUUCGGUUAACAGCCGAACGCGCUAACCAAUUGCGCCACGGAGGCUAUUGGAACUCGCCGGG .---------.......((---((.((((.(((.((((((((.......))))).....((((((.....)))))).((((.........))))..))).)))))))..))))....... ( -34.20) >DroGri_CAF1 155095 110 - 1 -----AAAGCGCAAAAAA-----GUAAUCCGCCCCCGGGUGGACUCGAACCACCAACCUUUCGGUUAACAGCCGAACGCGCUAACCAAUUGCGCCACGGAGGCAGUUGGCGGCCAGCCGA -----..(((((......-----....((((((....))))))................((((((.....)))))).)))))..((((((((.(....)..))))))))(((....))). ( -41.40) >DroSec_CAF1 115234 107 - 1 ----------AAAAAAAAG---UUUGAUGCGCCCCCGGGUGGACUCGAACCACCAACCUUUCGGUUAACAGCCGAACGCGCUAACCAAUUGCGCCACGGAGGCUAUUGGAACUCGCUGGA ----------.........---((..(((.(((.((((((((.......))))).....((((((.....)))))).((((.........))))..))).))))))..)).......... ( -34.40) >DroSim_CAF1 92543 107 - 1 ----------AAAAAAAAG---UUUGAUGCGCCCCCGGGUGGACUCGAACCACCAACCUUUCGGUUAACAGCCGAACGCGCUAACCAAUUGCGCCACGGAGGCUAUUGGAAGUCGCCGGG ----------.........---((..(((.(((.((((((((.......))))).....((((((.....)))))).((((.........))))..))).))))))..)).......... ( -34.40) >DroYak_CAF1 116026 117 - 1 A---ACAAGUAAAAAAAAUUUCUUUGAUGCGCCCCCGGGUGGACUCGAACCACCAACCUUUCGGUUAACAGCCGAACGCGCUAACCAAUUGCGCCACGGAGGCAGUUGGAACUCGACGGG .---................((.((((.((((.....(((((.......))))).....((((((.....)))))).))))...((((((((.(....)..))))))))...)))).)). ( -34.90) >DroAna_CAF1 109727 115 - 1 AAAGAAAAGCAAAAAAA-----GAUGAACCGCCCCCGGGUGGACUCGAACCACCAACCUUUCGGUUAACAGCCGAACGCGCUAACCGAUUGCGCCACGGAGGCUCUUGGAAGCGCCCUGG ........((.....((-----((......(((.((((((((.......))))).....((((((.....)))))).((((.........))))..))).)))))))....))....... ( -32.60) >consensus __________AAAAAAAAG___UUUGAUGCGCCCCCGGGUGGACUCGAACCACCAACCUUUCGGUUAACAGCCGAACGCGCUAACCAAUUGCGCCACGGAGGCUAUUGGAACUCGCCGGG ..............................(((.((((((((.......))))).....((((((.....)))))).((((.........))))..))).)))................. (-30.97 = -30.97 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:43 2006