Locus 6334

Sequence ID 2R_DroMel_CAF1
Location 19,852,629 – 19,852,720
Length 91
Max. P 0.855714
window10122

overview

Window 2

Location 19,852,629 – 19,852,720
Length 91
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 75.88
Mean single sequence MFE -11.66
Consensus MFE -9.46
Energy contribution -9.80
Covariance contribution 0.34
Combinations/Pair 1.17
Mean z-score -1.27
Structure conservation index 0.81
SVM decision value 0.81
SVM RNA-class probability 0.855714
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19852629 91 + 20766785
AUUUGUGUACAUUACUCGUCAGUUCAAAUAUUCAAAUCUUUCUCUUGUGUCCAUUACCAAUUAUUAGUUCCACUUGGAAGUAUGUUUAUUG
...((..((((..................................))))..))....((((...((.((((....)))).)).....)))) (  -7.08)
>DroSec_CAF1 94656 75 + 1
--------------CUCUUCAAUUCAAAUAUUCAA--CUUUCAUUUGUGACCACUACCAAGUAUUGCUUCCACUUGGAGGCAUGCUUAUUG
--------------.....................--.....................((((((.((((((....)))))))))))).... ( -14.40)
>DroSim_CAF1 71529 73 + 1
--------------CUCU--AAUUCAAAUAUUCAA--CUUUCUUUUGUGACCACUACCAAGAAUUGCUUCCACUUGGAAGCAUGCUUAUUG
--------------....--......((((..((.--..(((((..(((.....))).))))).(((((((....)))))))))..)))). ( -13.50)
>consensus
______________CUCUUCAAUUCAAAUAUUCAA__CUUUCUUUUGUGACCACUACCAAGUAUUGCUUCCACUUGGAAGCAUGCUUAUUG
..........................................................((((((.((((((....)))))))))))).... ( -9.46 =  -9.80 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:32 2006