Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,848,765 – 19,848,855 |
Length | 90 |
Max. P | 0.650435 |
Location | 19,848,765 – 19,848,855 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 81.38 |
Mean single sequence MFE | -34.27 |
Consensus MFE | -20.24 |
Energy contribution | -21.83 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.16 |
Mean z-score | -1.75 |
Structure conservation index | 0.59 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19848765 90 + 20766785 GAAGCCAAGAGUUCUCCUCCAGACAGGCUGACGAUUGCCUAGAAAGACAGCCGCACUGGAGCCAGCGGACUCCU----ACUGCCGGUGGAGGAG .............(((((((....((((........)))).........((((((..((((((...)).)))).----..)).))))))))))) ( -31.60) >DroSec_CAF1 90811 90 + 1 GAAGCCAAGAGUUCUCCUCCAGACAGGCUGACGAUCGCCUAGAAAGACAGCCGCACUGGAGCCAGCGGACUCCU----GCUGGCGGCGGAGGAG ...........(((((((((((...(((((.(..((.....))..).)))))...)))))((((((((....))----))))))...)))))). ( -41.10) >DroSim_CAF1 67037 90 + 1 GAAGCCAAGAGUUCUCCUCCAGACAGGCUGACGAUCGCCUAGAAAGACAGCCGCACUGGAGCCAGCGGACUCCU----GCUGGCGGCGGAGGAG ...........(((((((((((...(((((.(..((.....))..).)))))...)))))((((((((....))----))))))...)))))). ( -41.10) >DroEre_CAF1 92438 88 + 1 --AGCCAAGAGUUCUCCUCCAGACAGGCUGACGAUCGCCUAGAAAGACAGCCGCACUGGAGCCGGCGGACUCCA----CCAGGCGGCGGAGGAG --...........(((((((....((((........)))).........(((((..(((((((...)).)))))----....)))))))))))) ( -37.10) >DroYak_CAF1 90382 92 + 1 --GGCCAACAGUUCUCCUCCAGACAGGCUGACGAUCGCCUAGAAAGACAGCCGCACUGGAGCCACCGGACUGCGGACUGCCGACUGUGGAGGAG --...........((((((((.(.((((........)))).....(.((((((((((((.....))))..))))).))).)...).)))))))) ( -34.30) >DroAna_CAF1 87680 69 + 1 ---GCCAAGG-------CCCAGACAAUCUGACGUUCGCCUAGAAAGACAGCCGCUCUGGAGCCAGCGAA---------------AGAGUCGGAG ---.((..((-------((((((....(((...(((.....)))...)))....))))).)))..(...---------------.)....)).. ( -20.40) >consensus __AGCCAAGAGUUCUCCUCCAGACAGGCUGACGAUCGCCUAGAAAGACAGCCGCACUGGAGCCAGCGGACUCCU____GCUGGCGGCGGAGGAG ....((..((((((..((((((...(((((.(..((.....))..).)))))...)))))).....)))))).......(((....))).)).. (-20.24 = -21.83 + 1.60)
Location | 19,848,765 – 19,848,855 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 81.38 |
Mean single sequence MFE | -35.97 |
Consensus MFE | -23.03 |
Energy contribution | -24.58 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.10 |
Mean z-score | -1.78 |
Structure conservation index | 0.64 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.650435 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19848765 90 - 20766785 CUCCUCCACCGGCAGU----AGGAGUCCGCUGGCUCCAGUGCGGCUGUCUUUCUAGGCAAUCGUCAGCCUGUCUGGAGGAGAACUCUUGGCUUC ((((((((..(((((.----.((((((....))))))...(((..(((((....)))))..)))....)))))))))))))............. ( -37.80) >DroSec_CAF1 90811 90 - 1 CUCCUCCGCCGCCAGC----AGGAGUCCGCUGGCUCCAGUGCGGCUGUCUUUCUAGGCGAUCGUCAGCCUGUCUGGAGGAGAACUCUUGGCUUC ((((((((((((..((----.((((((....)))))).)))))))........(((((........)))))...)))))))............. ( -39.50) >DroSim_CAF1 67037 90 - 1 CUCCUCCGCCGCCAGC----AGGAGUCCGCUGGCUCCAGUGCGGCUGUCUUUCUAGGCGAUCGUCAGCCUGUCUGGAGGAGAACUCUUGGCUUC ((((((((((((..((----.((((((....)))))).)))))))........(((((........)))))...)))))))............. ( -39.50) >DroEre_CAF1 92438 88 - 1 CUCCUCCGCCGCCUGG----UGGAGUCCGCCGGCUCCAGUGCGGCUGUCUUUCUAGGCGAUCGUCAGCCUGUCUGGAGGAGAACUCUUGGCU-- ((((((((((((..(.----(((((((....))))))).))))))........(((((........)))))...)))))))...........-- ( -40.70) >DroYak_CAF1 90382 92 - 1 CUCCUCCACAGUCGGCAGUCCGCAGUCCGGUGGCUCCAGUGCGGCUGUCUUUCUAGGCGAUCGUCAGCCUGUCUGGAGGAGAACUGUUGGCC-- ((((((((.....(((((.(((((.(..((.....))).))))))))))....(((((........)))))..))))))))...........-- ( -37.70) >DroAna_CAF1 87680 69 - 1 CUCCGACUCU---------------UUCGCUGGCUCCAGAGCGGCUGUCUUUCUAGGCGAACGUCAGAUUGUCUGGG-------CCUUGGC--- ..........---------------...((((((.((((((((..(((((....)))))..))).......))))))-------))..)))--- ( -20.61) >consensus CUCCUCCGCCGCCAGC____AGGAGUCCGCUGGCUCCAGUGCGGCUGUCUUUCUAGGCGAUCGUCAGCCUGUCUGGAGGAGAACUCUUGGCU__ (((((((..............((((((....))))))...(((..(((((....)))))..)))..........)))))))............. (-23.03 = -24.58 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:31 2006