Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,845,909 – 19,846,001 |
Length | 92 |
Max. P | 0.567321 |
Location | 19,845,909 – 19,846,001 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 83.11 |
Mean single sequence MFE | -30.32 |
Consensus MFE | -20.95 |
Energy contribution | -21.28 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.04 |
Mean z-score | -1.76 |
Structure conservation index | 0.69 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.567321 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19845909 92 + 20766785 GGCACGACUGAUUGGGAUGCCUGGUGAAGCGACGUGCGCAGAAUUGACAUUUUGUGUGUGCAUUU----------------GUGCAUUUGUGCAUUUGCGCACAGUGG .(((((.((.((..((...))..))..))...)))))(((((((....)))))))(((((((..(----------------(..(....)..))..)))))))..... ( -32.90) >DroSec_CAF1 88025 84 + 1 GGCACGACUGAUUGGGAUGCCUGGUGAAGCGACGUGCGCAGAAUUGACAUUUUGUGUGUGCAUUU------------------------GUGCAUUUGCGCACAGUGG ..((((..(.((..((...))..)).)..)...(((((((((....((((.....))))(((...------------------------.))).))))))))).))). ( -26.60) >DroSim_CAF1 64256 84 + 1 GGCACGACUGAUUGGGAUGCCUGGUGAAGCGACGUGCGCAGAAUUGACAUUUUGUGUGUGCAUUU------------------------GUGCAUUUGCGCACAGUGG ..((((..(.((..((...))..)).)..)...(((((((((....((((.....))))(((...------------------------.))).))))))))).))). ( -26.60) >DroEre_CAF1 89520 100 + 1 GCCACGACUGAUUGGGAUGCCUGGUGAAGCGACGUGCGCAGAAUUGACAUUUUGUGUGUGCAUCU--------GUGCAUUUGUGCAUUUGUACAUUUGUGCACAGUGG ....((..(.((..((...))..)).)..)).((..((((((((....))))))))..))((.((--------((((((.(((((....)))))...)))))))))). ( -35.20) >DroYak_CAF1 87446 108 + 1 GGCACGACUGAUUGGGAUGCCUGGUGAAGCGACGUGCGCAGAAUUGACAUUUUGUGUGUGCAUUUGUACUUUUGUGCAUUUGUACAUUUGUACAUUUGUGCACAGUGG .(((((.((.((..((...))..))..))...)))))(((((((....)))))))(((..((..(((((...(((((....)))))...)))))..))..)))..... ( -37.80) >DroAna_CAF1 84912 76 + 1 GGCACGACUGAUUGGGAUGCCUGGUGGAGCGACGUGCGCAGAAUUGACAUUUUGUGUGUGCAUUU--------------------------------GUGCACAGUGG ..((((..(.((..((...))..)).)..)...(((((((((..((((((.....)))).)))))--------------------------------)))))).))). ( -22.80) >consensus GGCACGACUGAUUGGGAUGCCUGGUGAAGCGACGUGCGCAGAAUUGACAUUUUGUGUGUGCAUUU________________________GUGCAUUUGCGCACAGUGG ....(.((((((..((...))..)).....(.((..((((((((....))))))))..)))............................((((....)))).)))).) (-20.95 = -21.28 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:25 2006