| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,182,148 – 3,182,245 |
| Length | 97 |
| Max. P | 0.970435 |
| Location | 3,182,148 – 3,182,245 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.33 |
| Mean single sequence MFE | -23.50 |
| Consensus MFE | -13.95 |
| Energy contribution | -13.73 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.59 |
| SVM decision value | 1.66 |
| SVM RNA-class probability | 0.970435 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3182148 97 + 20766785 ----A----------UAUGUUUUCAA------UAUUUUGGAUAUUUUUAUUUAGUAGCUUUGCGUAUAUAAAUAUAAUGUGGUCAGACAUGUGACCGCGUAUAAAAUAGAUA-ACGUA-- ----.----------((((((.((..------(((((((.((((((.(((...(((....)))..))).)))))).(((((((((......))))))))).))))))))).)-)))))-- ( -22.00) >DroSec_CAF1 4032 98 + 1 ----A----------UAUGUUUUCAA------UAUUUUGGAUAUUUUUAUUCAGUAGCUUUGCGUAUAUAAAUAUAAUGUGGUCAGACAUGCGACCGCGUAUAAAAUAGAUAAACGUA-- ----.----------(((((((....------(((((((.((((((.(((...(((....)))..))).)))))).((((((((........)))))))).)))))))...)))))))-- ( -22.00) >DroEre_CAF1 7308 120 + 1 UAGCAACCGCAAAAGAAGAUUAUCGAAAGAUUUAUUUUGGAUAUUUUUAUUUGUGAGCAUUACUUAUAUAAAUAUAAUUUGGUCAUAUAUGUGACCGCGUAUAAAAUAGGUAAACGUACA ..((...((((((.((((((..((((((......))))))..)))))).)))))).)).((((((((.....((((...(((((((....)))))))..))))..))))))))....... ( -26.50) >consensus ____A__________UAUGUUUUCAA______UAUUUUGGAUAUUUUUAUUUAGUAGCUUUGCGUAUAUAAAUAUAAUGUGGUCAGACAUGUGACCGCGUAUAAAAUAGAUAAACGUA__ .....................................((((((....)))))).......(((((.(((...((((.(((((((........)))))))))))......))).))))).. (-13.95 = -13.73 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:17 2006