Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,844,597 – 19,844,716 |
Length | 119 |
Max. P | 0.677702 |
Location | 19,844,597 – 19,844,716 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.20 |
Mean single sequence MFE | -26.12 |
Consensus MFE | -18.55 |
Energy contribution | -19.80 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.25 |
Mean z-score | -1.74 |
Structure conservation index | 0.71 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.677702 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19844597 119 + 20766785 AAGUACGCUUCUUUAUUGACUCAUCGCAGCAGAUAAGUUCAUACUUUUCACAAAACCCAGUUAGCCAAAACUCCGGUGGUUUCCACCUAAUUGCAGUGUACUUAACACCAUUUAAA-UGC (((((((((((......))......((((..((.((((....)))).)).........................(((((...)))))...))))))))))))).............-... ( -23.10) >DroSec_CAF1 86708 119 + 1 AAGUACGCUUCUGUAUUGACUCAUUGCCGCAGAUAAGUUCACACUUUUCACAAAACCCAAUUAGCCAAAACUCCGGCGAUUUCCACCUAAUUGCAGUGUACUUAACACCAUUUAAA-UGC (((((((((...(((.((...)).))).(((((.((((....)))).))..............(((........)))..............)))))))))))).............-... ( -20.10) >DroEre_CAF1 88282 118 + 1 AAGUACGCUGCUGUAUUGACUCAUCGCCGCAA-UGCA-UCAUGCGCUUCCCAAAACCCAGUUAGCGAAAACUCCGGCUAUUUCCACCUAAUUGCAGUGUACUUAACACCAUUUAAAGUGC ((((((((((((((((((.(........))))-))))-.....((((..(.........)..))))..........................)))))))))))..(((........))). ( -26.70) >DroYak_CAF1 86087 120 + 1 GAGCACGCUGCUGCAUUGACUAAUCGCCGCAGACGAAUUCAUACUUUUCACAAAGCCCAGUUAGCGAAAACUGCGGCGAUUUCCACCUAAUUGCAGUGUACUUAACACCAUUUAGAGUGC (((.(((((((..........(((((((((((..(((.........))).....((.......)).....)))))))))))...........))))))).)))..(((........))). ( -34.60) >consensus AAGUACGCUGCUGUAUUGACUCAUCGCCGCAGAUAAAUUCAUACUUUUCACAAAACCCAGUUAGCCAAAACUCCGGCGAUUUCCACCUAAUUGCAGUGUACUUAACACCAUUUAAA_UGC (((((((((((...........(((((((..((.((((....)))).)).........((((......)))).)))))))............)))))))))))................. (-18.55 = -19.80 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:22 2006