Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,841,870 – 19,841,968 |
Length | 98 |
Max. P | 0.761764 |
Location | 19,841,870 – 19,841,968 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.10 |
Mean single sequence MFE | -28.11 |
Consensus MFE | -18.97 |
Energy contribution | -20.41 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.05 |
Mean z-score | -1.42 |
Structure conservation index | 0.67 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.761764 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19841870 98 + 20766785 CGCGUCCGUCGCCGACGAGUGGUAAAUUGUAACUGUGACAAAACGCGAACGCGAACGCGGCAAAGU--------GAAAAAGUCUUUGGCGCAG-CGAC-------------GCAGCCGAA .(((((((((((..((((........))))....)))))....(((....)))...(((.(((((.--------........))))).))).)-.)))-------------))....... ( -31.90) >DroPse_CAF1 83494 93 + 1 CGCGUCCGUCGCUUACAAUUGGUAAAUUGUAACUGUGACAAAAUG------CGAACGCGGCACAGU--------GAAAAAGUCUUUGGCGCAGGCCAA-------------GCAGCAGCA (((((..(((((((((((((....))))))))..)))))...)))------))...((.((.....--------((.....))((((((....)))))-------------)..)).)). ( -27.50) >DroWil_CAF1 181270 78 + 1 CGCGACCGUCGCUUACAAUUGGUAAAUUGUAACUGUGACAAAAUG------CGAACGCGGCAAAGU--------GAAAAAGUCUUUGGCGCA---------------------------- ((((...(((((((((((((....))))))))..)))))....))------))...(((.(((((.--------........))))).))).---------------------------- ( -26.30) >DroYak_CAF1 83131 106 + 1 CGCGUCCGUCGCCGACGAGUGGUAAAUUGUAACUGUGACAAAACGCGAACGCGAACGCGGCAAAGUGAAUAAGUGAAAAAGUCUUUGGCGCAG-CGAC-------------GCAGGCGAA .(((((((((((..((((........))))....)))))....(((....)))...(((.(((((.................))))).))).)-.)))-------------))....... ( -31.23) >DroAna_CAF1 80306 105 + 1 UGCGUCCGUAUCUUACAAUUGGUAAAUUGUAACUGUGACAAAAUG------CGAACGCGGCAAAGU--------GAAAAAGUCUUUGGCGCAG-CAACAAAACGACAAGCAGCGGCCUGA (((((.(((((.((((((((....))))))))..........)))------)).))(((.(((((.--------........))))).))).)-)).........((.((....)).)). ( -24.20) >DroPer_CAF1 83036 93 + 1 CGCGUCCGUCGCUUACAAUUGGUAAAUUGUAACUGUGACAAAAUG------CGAACGCGGCACAGU--------GAAAAAGUCUUUGGCGCAGGCCAA-------------GCAGCAGCA (((((..(((((((((((((....))))))))..)))))...)))------))...((.((.....--------((.....))((((((....)))))-------------)..)).)). ( -27.50) >consensus CGCGUCCGUCGCUUACAAUUGGUAAAUUGUAACUGUGACAAAAUG______CGAACGCGGCAAAGU________GAAAAAGUCUUUGGCGCAG_CCAC_____________GCAGCCGAA .((....(((((.(((((((....)))))))...))))).................(((.(((((.................))))).)))....................))....... (-18.97 = -20.41 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:21 2006