Locus 6327

Sequence ID 2R_DroMel_CAF1
Location 19,837,677 – 19,837,772
Length 95
Max. P 0.500000
window10109

overview

Window 9

Location 19,837,677 – 19,837,772
Length 95
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 72.41
Mean single sequence MFE -16.60
Consensus MFE -1.74
Energy contribution -1.94
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.42
Structure conservation index 0.10
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19837677 95 - 20766785
AGAUUGGACCUCCAAU------CAGCUUCAGCUCCAGCUCCAGAUCCCGGUUUCAAUCCAUCUCGAUUCCGUUGUCAUCCAAUCCAUCUUUCACACUCCAG
.(((((((........------.((((........))))...(((..(((..((..........))..)))..))).)))))))................. ( -19.10)
>DroPse_CAF1 78952 83 - 1
---------UUUCAUUGAGCUUCAA---AAGGUCCAGUUCCAGAUCCA------GAUCCAUCACGUUUCAGUUGCCAAUCAAUCGAUCUUUCACACUUCAG
---------....((((..((....---..))..))))...(((((..------((..(.....)..)).((((.....)))).)))))............ (  -7.30)
>DroSec_CAF1 79782 98 - 1
---UUGGACCUCCAAUGAGCUACAGCUUCAGCUCCAGCUCCAGAUCCCGGUUUCGAUCCAUCUCGAUUCCGUUGUCAUCCAAUCCAUCUUUCACACUCCAG
---(((((........(((((..(((....)))..)))))..(((..(((..((((......))))..)))..))).)))))................... ( -27.00)
>DroYak_CAF1 78758 98 - 1
GGAUUGCAUCUCCCAUGAGCUCCAGCUCCAUCUCUAG---CAGAUCCCGGUUUGGAUCCAUCUCGAUGCCGUUGUCAUCCAAUCCAUCUUUCACACUCCAG
((((((..........((((....)))).........---..(((..((((.(.((......)).).))))..)))...))))))................ ( -22.30)
>DroPer_CAF1 78486 83 - 1
---------UUUCAUUGAGCUUCAA---AAGGUCCAGUUCCAGAUCCA------GAUCCAUCACGUUUCAGUUGCCAAUCAAUCGAUCUUUCACACUUCAG
---------....((((..((....---..))..))))...(((((..------((..(.....)..)).((((.....)))).)))))............ (  -7.30)
>consensus
___UUG_A_CUCCAAUGAGCUUCAGCU_CAGCUCCAGCUCCAGAUCCCGGUUU_GAUCCAUCUCGAUUCCGUUGUCAUCCAAUCCAUCUUUCACACUCCAG
..........................................((((........))))........................................... ( -1.74 =  -1.94 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:20 2006