Locus 6326

Sequence ID	2R_DroMel_CAF1
Location	19,831,053 – 19,831,146
Length	93
Max. P	0.810590

overview

Window 8

Location	19,831,053 – 19,831,146
Length	93
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	78.61
Mean single sequence MFE	-14.48
Consensus MFE	-10.16
Energy contribution	-9.76
Covariance contribution	-0.40
Combinations/Pair	1.13
Mean z-score	-1.72
Structure conservation index	0.70
SVM decision value	0.65
SVM RNA-class probability	0.810590
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19831053 93 - 20766785
AUUGUGGAAAGGAAACCCAGCCGGCACAAGAGAAAAAAGACUUGAACUCAAGUGUUGAAGUGUUGUCUUGAGCAAACAAACAAACAAACAGGA
.((((((...(....)....)).((.(((((.((..((.(((((....))))).))......)).))))).))..)))).............. ( -20.00)
>DroPse_CAF1 72456 74 - 1
AUUGUGGAAAGGAAAUACAA----C----------AAAAACUUGAGCUCAAGUGUUGAAGUG---UCUUGAACAAACAAACAG--CAAUAGGA
.((((...((((.....(((----(----------....(((((....))))))))).....---))))..))))........--........ ( -11.60)
>DroYak_CAF1 71865 88 - 1
AUUGUGGAAAGGAAACCCAG----CGCCACAGAA-AAAGACUUGAACUCAAGUGUUGAAGUGUUGUCUUGAGCAAACAAACAAACAAACAGGA
.((((((...((....))..----..))))))..-....(((((....)))))(((.(((......))).))).................... ( -17.20)
>DroAna_CAF1 70279 73 - 1
AUUGUGGAAAGGAAAUACAA----C---------AAAAAACUUGAACUCAAGUGUUGAAGUG---UCUUGAAUAAACAA----ACAAACAGCA
.((((....((((..(((..----(---------((...(((((....))))).)))..)))---))))......))))----.......... ( -12.00)
>DroPer_CAF1 72010 74 - 1
AUUGUGGAAAGGAAAUACAA----C----------AAAAACUUGAGCUCAAGUGUUGAAGUG---UCUUGAACAAACAAACAG--CAAUAGGA
.((((...((((.....(((----(----------....(((((....))))))))).....---))))..))))........--........ ( -11.60)
>consensus
AUUGUGGAAAGGAAAUACAA____C__________AAAAACUUGAACUCAAGUGUUGAAGUG___UCUUGAACAAACAAACAAACAAACAGGA
.((((..................................(((((....)))))(((.(((......))).)))..)))).............. (-10.16 =  -9.76 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:19 2006