Locus 6324

Sequence ID 2R_DroMel_CAF1
Location 19,825,223 – 19,825,333
Length 110
Max. P 0.872716
window10105

overview

Window 5

Location 19,825,223 – 19,825,333
Length 110
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 84.41
Mean single sequence MFE -26.42
Consensus MFE -16.76
Energy contribution -18.80
Covariance contribution 2.04
Combinations/Pair 1.04
Mean z-score -2.54
Structure conservation index 0.63
SVM decision value 0.88
SVM RNA-class probability 0.872716
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19825223 110 - 20766785
AAAACAUGCCGUUUUUUCUGGAAAUUCUU-ACAGCUACUGCUACCUUGCACUGUUUAGAAUUUACAAUGACGCUCUCAUAAAUAUGCACCAGAUUCGGCUACG---------CGUUGGUA
.......((((.....((((((((((((.-((((....(((......)))))))..)))))))...((((.....)))).........)))))..))))....---------........ ( -25.50)
>DroSec_CAF1 67464 94 - 1
AAAACAUGCCGUUUUUUCUGGAAAUUCUU-ACAGC---UGCUACCUUGCACUGUUUAGAAUUUACAAUGACGCUCUCAUAAAUAUGCACCAG----------------------UAGGUA
......((((.......(((((((((((.-((((.---(((......)))))))..)))))))...((((.....)))).........))))----------------------..)))) ( -21.80)
>DroSim_CAF1 55585 94 - 1
AAAACAUGCCGUUUUUUCUGGAAAUUCUU-ACAGC---UGCUACCUUGCACUGUUUAGAAUUUACAAUGACGCUCUCAUAAAUAUGCACCAG----------------------UAGGUA
......((((.......(((((((((((.-((((.---(((......)))))))..)))))))...((((.....)))).........))))----------------------..)))) ( -21.80)
>DroEre_CAF1 69010 107 - 1
AAAACACGCCGUUUCUUCUGGAAAUUCUUUACAGC---UGCUACCUUGCACUGUUUAGAAUGUACAAUGGCGCACUCAUAAAUAUGCACCAGAUUCGGCUUCU----------GUGGGUA
....(((((((..((...((...(((((..((((.---(((......)))))))..)))))...)).(((.(((..........))).)))))..))))....----------))).... ( -30.60)
>DroYak_CAF1 65604 117 - 1
ACAACAUGCCGUUUCUUCUGGAAAUUCUUCACAGC---UGCUACCUUGCACUGUUUAGAAUUUACAAUGACGCACUCAUAAAUAUGCACCAGAUUCGGCUUCUGUAGAAUUCUGUAGGUA
.......((((.....((((((((((((..((((.---(((......)))))))..)))))))........(((..........))).)))))..)))).(((((((....))))))).. ( -32.40)
>consensus
AAAACAUGCCGUUUUUUCUGGAAAUUCUU_ACAGC___UGCUACCUUGCACUGUUUAGAAUUUACAAUGACGCUCUCAUAAAUAUGCACCAGAUUCGGCU_C___________GUAGGUA
.......((((.....((((((((((((..((((....(((......)))))))..)))))))...((((.....)))).........)))))..))))..................... (-16.76 = -18.80 +   2.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:17 2006