Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,824,642 – 19,824,753 |
Length | 111 |
Max. P | 0.728005 |
Location | 19,824,642 – 19,824,753 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.15 |
Mean single sequence MFE | -34.08 |
Consensus MFE | -21.84 |
Energy contribution | -25.02 |
Covariance contribution | 3.18 |
Combinations/Pair | 1.06 |
Mean z-score | -1.95 |
Structure conservation index | 0.64 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.728005 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19824642 111 + 20766785 GUACGGGCAGUGCCGUUAUGGCACAUUUUCAUUAUUUUA------UAUUCCCAGGAAAGGCUGCGCUGGC---CGCCGGGCAAUCCGGCCCAGUUUUCUGGCUUUUCUGGCUUACAAAAC (((..(((.(((((.....)))))...............------......((((((((.(...(((((.---.(((((.....)))))))))).....).))))))))))))))..... ( -38.90) >DroSec_CAF1 66903 113 + 1 GUACGGGCAGUGCCGUUAUGGCACAUUUUCAUUAUUUUA------UAUUCCCAGGAAAGGCUGCGCCGGCUGCCGCCGAGCAAUCCGGCCCAGUU-UCUGGCUUUUCUGGCUUACAAAAC (((.((.(((((((.....)))))...............------.....(((((((.(((((.((((((....)))).))....)))))...))-)))))......)).)))))..... ( -36.80) >DroSim_CAF1 55024 112 + 1 GUACGGGCAGUGCCGUUAUGGCACAUUUUCAUUAUUUUA------UAUUCCCAGGAAAGGCUGCGCCGGCCG-CGCCGGGCAAUCCGGCCCAGUU-UCUGGCUUUUCUGGCUUACAAAAC (((..(((.(((((.....)))))...............------......((((((((((.((....)).)-)(((((.....)))))((((..-.))))))))))))))))))..... ( -37.10) >DroEre_CAF1 68436 101 + 1 GUACUGGCAGUGCCGUUAUGGCACAUUUCCAUUAUUUUA----UUUAUUCCCAGGAAAGGCUGCGUUAG------CCGAGCAAUCCGGCCCAGUUUUC---------UGGCUUACAAAAC (((..(((.(((((.....)))))...............----........((((((((((((.(((.(------(...))))).)))))...)))))---------))))))))..... ( -26.50) >DroYak_CAF1 64996 99 + 1 GUACUGGCAGUGCCGUUAUGGCACAUUUUCAUUAUUUUACGAGUAUAUUCCCAGGAAU---------------------AUACUCCGGCCCAGUUUUCUGGCUUUUCUGGCUUACAAAAC .....(((.(((((.....)))))................((((((((((....))))---------------------))))))..)))..(((((..((((.....))))...))))) ( -31.10) >consensus GUACGGGCAGUGCCGUUAUGGCACAUUUUCAUUAUUUUA______UAUUCCCAGGAAAGGCUGCGCCGGC___CGCCGAGCAAUCCGGCCCAGUUUUCUGGCUUUUCUGGCUUACAAAAC (((..(((.(((((.....)))))...........................((((((((..(((.(((((....)))))))).......((((....))))))))))))))))))..... (-21.84 = -25.02 + 3.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:16 2006