Locus 6320

Sequence ID 2R_DroMel_CAF1
Location 19,813,362 – 19,813,456
Length 94
Max. P 0.761804
window10099

overview

Window 9

Location 19,813,362 – 19,813,456
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 74.86
Mean single sequence MFE -33.97
Consensus MFE -20.14
Energy contribution -23.27
Covariance contribution 3.13
Combinations/Pair 1.04
Mean z-score -1.55
Structure conservation index 0.59
SVM decision value 0.50
SVM RNA-class probability 0.761804
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19813362 94 - 20766785
UCGACGAUGUUCUGGUGACUUUGAGUCGACUGCGACUCGAGUGCCGACGCUGCGGCCAGAGCGAGACGGCCGAUCGCACUCACACACCGAGGCA
.......(((..(((((.....((((((....))))))((((((.((.....(((((..........))))).))))))))...)))))..))) ( -38.50)
>DroGri_CAF1 73198 74 - 1
UCGACGUCAACUUCGUUGCU-----UCGGCUGA--CUG----GCAGAGUUUGCCA-UAGAGCGAGACAGAUGAUCGCACACA--CACA------
.(((((((...((((((.((-----..(((.((--((.----....)))).))).-.))))))))...)))).)))......--....------ ( -20.20)
>DroSec_CAF1 55763 92 - 1
UCGACGAUGUUCUGGUGACUUUGAGUCGACUGCGACUCGAGUGCCGCCGCUGCGGCCAGAGCGAGACGCCCGAUCGCACUCA--CACCAAGGCA
.......(((..(((((.....((((((....))))))(((((((((....)))))....((((.........)))))))).--)))))..))) ( -38.10)
>DroSim_CAF1 34518 92 - 1
UCGACGAUGUUCUGGUGACUUUGAGUCGACUGCGACUCGAGUGCCGCCGCUGCGGCCAGAGCGAGACGGCCGAUCGCACUCA--CACCAAGGCA
.......(((..(((((.....((((((....))))))((((((.((((((((.......)).)).)))).....)))))).--)))))..))) ( -39.20)
>DroEre_CAF1 56781 78 - 1
-------UGUUCUGGUGACUUUGAGUCGACUGCGAC-CGAGUGCCG------CGGCCAGAGCGAGACGGCCGAUCGCACUCA--CACCGAGGCA
-------.((..(((((.....(.((((....))))-)((((((..------(((((..........)))))...)))))).--)))))..)). ( -34.70)
>DroYak_CAF1 53210 80 - 1
UCGACGAUGUUCUGGUGACUUUGAGUCGACGGCGACUCGAGUG------------CCAGAGCGAGACGGCCGAUCGCACUCA--CACCGAGGCA
(((.((.(((((((((.((((.((((((....)))))))))))------------))))))))...))..)))..((.(((.--....))))). ( -33.10)
>consensus
UCGACGAUGUUCUGGUGACUUUGAGUCGACUGCGACUCGAGUGCCG_CGCUGCGGCCAGAGCGAGACGGCCGAUCGCACUCA__CACCGAGGCA
........((..(((((.....((((((....))))))((((((((......))))....((((.........))))))))...)))))..)). (-20.14 = -23.27 +   3.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:11 2006