| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,797,859 – 19,797,952 |
| Length | 93 |
| Max. P | 0.813630 |
| Location | 19,797,859 – 19,797,952 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 76.87 |
| Mean single sequence MFE | -25.31 |
| Consensus MFE | -17.86 |
| Energy contribution | -17.83 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.813630 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19797859 93 - 20766785 --UUGUG-GUUCACC------------------CCCUUUAAUUUGACUAGCACAAGUACUUCUUCUUGGGUUUCAUCAUGCGAAUGCGUCAUUUGGAGCCCAACCCGUUGGCCA --...((-((..((.------------------.......(((((.......)))))........((((((((((..((((....))))....))))))))))...))..)))) ( -21.70) >DroVir_CAF1 51401 105 - 1 AUUCGUA-UUCGAGC--------CGGAACGCUUUUCAUUAAUUUGACUAGCACAAGUAUUUCUUCUUGGGUUUCAUCAUGCGAAUGCGUCAUUUGGAGCCCAGUCCGUUGGGCA ...((((-((((...--------.((((((((..(((......)))..))).((((........)))).)))))......)))))))).........((((((....)))))). ( -32.30) >DroGri_CAF1 53276 106 - 1 CGUAGUGUUUCAUAU--------CAUAUCGCUUCCAUUUAAUUUGACUAGCACAAGUACUUCUUCUUGGGUUUCAUCAUGCGAAUGCGUCAUUUGGAGCCCAAUCCAUUAGGCA (.(((((........--------......(((..((.......))...)))..............((((((((((..((((....))))....))))))))))..))))).).. ( -21.40) >DroWil_CAF1 74405 104 - 1 --AUGUA-UUUCAUC-----CAUCUA--CUUUUGUUUUUAAUUUGACUAGCACAAGUAUUUCUUUUUGGGUUUCAUCAUGCGAAUGCGUCAUUUGGAGCCCAAGCCGUUGGCCA --.....-......(-----((.(((--(((.((((............)))).)))))......(((((((((((..((((....))))....)))))))))))..).)))... ( -22.50) >DroMoj_CAF1 70872 98 - 1 CGUCGUA-UUCGAGC--------CCGAUCG-------GUAAUUUGACUAGCACAAGUAUUUCUUCUUGGGUUUCAUCAUGCGAAUGCGUCAUUUGGAGCCCAGUCCGUUGGGCA ..(((..-..)))((--------((((.((-------(..(((((.......)))))........((((((((((..((((....))))....)))))))))).))))))))). ( -32.20) >DroAna_CAF1 35756 111 - 1 --UAUCG-GUUCAGCUCACCCGCCAACCCUCUCCUCUAUAAUUUGACUAGCACAAGUAUUUCUUCUUCGGUUUCAUCAUGCGAAUGCGUCAUUUGGAGCCCAACCCGUUGGCCA --....(-((.......))).((((((......(((((.....((((..(((...((((.....(....).......))))...)))))))..)))))........)))))).. ( -21.74) >consensus __UAGUA_UUCCAGC________CAAA_CGCUUCUCUUUAAUUUGACUAGCACAAGUAUUUCUUCUUGGGUUUCAUCAUGCGAAUGCGUCAUUUGGAGCCCAAUCCGUUGGCCA ...........................................((.(((((..(((.....))).((((((((((..((((....))))....))))))))))...))))).)) (-17.86 = -17.83 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:05 2006