| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,797,255 – 19,797,363 |
| Length | 108 |
| Max. P | 0.658040 |
| Location | 19,797,255 – 19,797,363 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 76.01 |
| Mean single sequence MFE | -35.12 |
| Consensus MFE | -22.34 |
| Energy contribution | -22.53 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.658040 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19797255 108 + 20766785 UUUAUA---AGCUUU--U--AACCGCUUUUAGGGCAGCAAUCUGCAGCAGCAGUGCUGGAACUGCGGGCGCAAGGCAACGGAGACCUGUUCCGGCUGCAACAUGGCCCGAUAUUG ..((.(---(((...--.--....)))).))((((.((.....)).(((((.(((((.(.....).)))))..((.(((((....))))))).)))))......))))....... ( -37.30) >DroVir_CAF1 50887 110 + 1 AUCAUU---AUAUUUUCG--AAACUAUUUAAGGGCAACAAUUUGCAGCAACAAUGCUGGAACUGCGGUCGCAAGGCCACUGAAACCUGUUCCGGCUGCAACAUGGCACGAUAUUG ......---......(((--...((((......((((....)))).(((.....((((((((.(.((((....)))).)........)))))))))))...))))..)))..... ( -26.90) >DroWil_CAF1 73857 111 + 1 UUUAGCAAUAUUUUG--U--GAUUUCUUGCAGGGCAACUCACUGCAGCAACAAUGUUGGAACUGCGGACGCAAGGCCACCGAGACGUGCUCUGGCUGCAACAUGGCUCGCUAUUG ..((((.........--.--.........(((((((.(((.((((((((((...))))...)))))).(....)......)))...)))))))(((.......)))..))))... ( -30.80) >DroYak_CAF1 37015 108 + 1 UUUUUC---AACUUU--C--AACCACUUUCAGGGCAGCAAUCUGCAGCAGCAGUGCUGGAACUGCGGCCGCAAGGCCACGGAGACCUGUUCAGGUUGCAACAUGGCCCGAUACUG ......---......--.--...........((((.((((((((.(((((((((......)))))((((....))))..(....).))))))))))))......))))....... ( -41.20) >DroMoj_CAF1 70364 112 + 1 AAUAUU---AUUCCUUGGCCCAUCCAUUACAGGGCAGCAGCCUGCAGCAGCAAUGCUGGAACUGCGGCCGCAAGGCCACGGAGACGUGCUCCGGCUGCAACAUGGCCCGCUACUG ......---...((.((((((..........)))).((((((..(((((....))))).....((((((....))))(((....)))))...))))))..)).)).......... ( -48.20) >DroAna_CAF1 35174 102 + 1 UUUCUU---AAC--------AAC--CUUUUAGGGCAGCAACUUGCAACAGCAGUGUUGGAAUUGCGGACGCAAGGCCACAGAAACCUGCUCAGGAUGCAACAUGGCUCGUUAUUG .....(---(((--------...--......((((((((((((((....)))).))))...(((.((.(....).)).)))....))))))..((.((......))))))))... ( -26.30) >consensus UUUAUU___AUCUUU__G__AACCUCUUUCAGGGCAGCAAUCUGCAGCAGCAAUGCUGGAACUGCGGACGCAAGGCCACGGAGACCUGCUCCGGCUGCAACAUGGCCCGAUAUUG ...............................((((.......((((((......((.((..(((.((.(....).)).)))...)).))....)))))).....))))....... (-22.34 = -22.53 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:04 2006