| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,794,305 – 19,794,419 |
| Length | 114 |
| Max. P | 0.571569 |
| Location | 19,794,305 – 19,794,419 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 79.08 |
| Mean single sequence MFE | -29.97 |
| Consensus MFE | -19.56 |
| Energy contribution | -19.75 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.571569 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19794305 114 - 20766785 UGGAUACAGCUGCAACUGGCUGUGUUUUCACAGCCAUUCAGGCACGCCACCGCCUUGCCAAUCGAAGGGCCACACGACCACCCACAGCCAC--AUCCACAUCCACUGCCAUCCGAA (((((...((((....((((((((....))))))))....((((.((....))..)))).......(((...........))).))))...--))))).................. ( -32.50) >DroPse_CAF1 34802 116 - 1 UGGAUACAGCUGCAACUGGGUGUGUUUUCACAGCCAUUCAGGCACGCCACCGCCAUGCCAAUCGAAGGGACACACAGAUACAGUGAGGCACACAGCGAGACAGACAGAUAUACGGA ((..(...((((....(((.((((....)))).)))....(((........))).((((..((....))...(((.......))).))))..)))).)..)).............. ( -27.70) >DroSec_CAF1 36762 114 - 1 UGGAUACAGCUGCAACUGGCUGUGUUUUCACAGCCAUUCAGGCACGCCACCGCCUUGCCAAUCGAAGGGCCACACGACCACCCACAGCCAC--AUCCACAUCCACUGCCAUCCGAA (((((...((((....((((((((....))))))))....((((.((....))..)))).......(((...........))).))))...--))))).................. ( -32.50) >DroWil_CAF1 68294 99 - 1 UGGAUACAGCUGCAACUGGCUGUGUUUUCACAGCCAUUCAGGCACGCCACCGCCAUGCCAAUCGAAGGGACACACAC----ACAUAGACAC--AGCCAAACAUAC----------- ........((((....((((((((....)))))))).((.((((.((....))..))))..((....))........----.....))..)--))).........----------- ( -25.20) >DroAna_CAF1 32158 104 - 1 UGGAUACAGCUGCAACUGGCUGUGUUUUCACAGCCAUUCAGGCAAGCCACCGCCAUGCCAAUCGAAGGAACACACGCUCCUC--CCGCCCC--AUCC------UCC--GGAAGGAA .((((...((.(((..((((((((....))))))))....(((........))).))).....(.((((........)))).--).))...--))))------(((--....))). ( -34.20) >DroPer_CAF1 34420 116 - 1 UGGAUACAGCUGCAACUGGGUGUGUUUUCACAGCCAUUCAGGCACGCCACCGCCAUGCCAAUCGAAGGGACACACAGAUACAGUGAGGCACACAGCGAGACAGACAGAUAUACGGA ((..(...((((....(((.((((....)))).)))....(((........))).((((..((....))...(((.......))).))))..)))).)..)).............. ( -27.70) >consensus UGGAUACAGCUGCAACUGGCUGUGUUUUCACAGCCAUUCAGGCACGCCACCGCCAUGCCAAUCGAAGGGACACACAAACACACACAGCCAC__AGCCACACACACAG_CAUACGAA .((.....(((((...((((((((....)))))))).....))).)).....)).......((....))............................................... (-19.56 = -19.75 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:03 2006