| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,790,266 – 19,790,367 |
| Length | 101 |
| Max. P | 0.500000 |
| Location | 19,790,266 – 19,790,367 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 82.78 |
| Mean single sequence MFE | -26.30 |
| Consensus MFE | -19.25 |
| Energy contribution | -19.03 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.73 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19790266 101 + 20766785 GCCAGCUCCUUUCCCCUAGCUCCCCUUCAGUACGGGAUCCUGGAUCCUGAAGCCUGGAUCCCGCUCCAUCCUGCCGCUUCAGAUUCAGCUUCAGCUUCAGC ((.((((....((((...(((.......)))..))))..(((((((.((((((..((((........))))....)))))))))))))....))))...)) ( -27.40) >DroSec_CAF1 32825 94 + 1 GCCAGCCCCU-UCCCUCAGCUCCCCUUCAGUCCGGGAUCCUGGAUCCUGAAGCCUGGAUCCCGCUCCAUCCUGCCGCUUCAGAUUCAGC------UUCAGC .((((.....-((((...(((.......)))..))))..))))...(((((((.(((((((.((........)).).....))))))))------))))). ( -25.70) >DroEre_CAF1 32162 94 + 1 GCC----CCU---CCCCAUUUCCCCUGCAAGCCAGGAUCCUGGAGCCUGGAGCCUGGAUCCCGCUCCUUCCUGCCGCUUCAGAUUCAGCCUCAGCUUCAGC ...----...---...........(((.(((((((((....(((((..(((.......))).))))).)))))..)))))))....(((....)))..... ( -25.80) >consensus GCCAGC_CCU_UCCCCCAGCUCCCCUUCAGUCCGGGAUCCUGGAUCCUGAAGCCUGGAUCCCGCUCCAUCCUGCCGCUUCAGAUUCAGC_UCAGCUUCAGC .............(((..(((.......)))..)))...(((((((.((((((..((((........))))....)))))))))))))............. (-19.25 = -19.03 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:00 2006