Locus 6312

Sequence ID 2R_DroMel_CAF1
Location 19,782,825 – 19,782,928
Length 103
Max. P 0.636682
window10087

overview

Window 7

Location 19,782,825 – 19,782,928
Length 103
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 79.42
Mean single sequence MFE -21.33
Consensus MFE -11.98
Energy contribution -12.15
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.85
Structure conservation index 0.56
SVM decision value 0.21
SVM RNA-class probability 0.636682
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19782825 103 - 20766785
UGGCAUUCCAGUUGGCACUGCCUUCGGUCUUCAGAGCAGCUUCCAACUGCGUGCCGAUAUUUAAAUAAAUUGCCAACCAAUUGUGCACACCCACUCCCAC-UCC--
.(((((..(((((((..((((..((........))))))...))))))).)))))...............((((((....))).))).............-...-- ( -25.60)
>DroVir_CAF1 31698 88 - 1
UGAAAUUCCAGUUGGCAUUGCGUU-----------------UCCAACUGCGUGCCGAUAUUUAAAUAAAUUGCCAACCAAUUGUGCACACACACACACAC-GCACG
........(((((((.(......)-----------------.)))))))(((((.............(((((.....)))))(((......)))......-))))) ( -17.10)
>DroGri_CAF1 25679 86 - 1
UGAAAUUCCAGUUGGCAUUGCGUU-----------------UCCAACUGUGUGCCGAUAUUUAAAUAAAUUGCCAACCAAUUGUGCACACACACACAAAG-AUA--
.........((((((.(......)-----------------.))))))((((((((((.....................)))).))))))..........-...-- ( -15.90)
>DroEre_CAF1 24371 105 - 1
UGGCAUUCCAGUUGGCACUGCCUUGGGUCUUCAGCUCAGCUCCCAACUGCGUGCCGAUAUUUAAAUAAAUUGCCAACCAAUUGUGCACACACACACCCAC-UCCCG
(((((.....((((((((.((.(((((.....(((...))))))))..))))))))))((((....)))))))))......((((......)))).....-..... ( -26.30)
>DroWil_CAF1 44519 90 - 1
UGAAAUUCCAGUUGGCAUUGCGUUU----------------GCCAACUGCGUGCCGAUAUUUAAAUAAAUUGCCAACCAAUUGUGCCCACAUACACAAGCAUGGCA
........(((((((((.......)----------------)))))))).....................(((((.....(((((........)))))...))))) ( -23.90)
>DroAna_CAF1 20002 88 - 1
UGGCAUUCCAGUUGGCAUUGCGU-----------------UUCCAACUGCGUGCCGAUAUUUAAAUAAAUUGCCAACCAAUUGUGCACACACACUCCCAC-ACUCU
.(((((..(((((((.(......-----------------).))))))).)))))...............((((((....))).))).............-..... ( -19.20)
>consensus
UGAAAUUCCAGUUGGCAUUGCGUU_________________UCCAACUGCGUGCCGAUAUUUAAAUAAAUUGCCAACCAAUUGUGCACACACACACACAC_UCAC_
........(((((((...........................))))))).((((((((.....................)))).)))).................. (-11.98 = -12.15 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:59 2006