Locus 6311

Sequence ID 2R_DroMel_CAF1
Location 19,781,796 – 19,781,888
Length 92
Max. P 0.766130
window10086

overview

Window 6

Location 19,781,796 – 19,781,888
Length 92
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 76.73
Mean single sequence MFE -24.40
Consensus MFE -15.14
Energy contribution -16.37
Covariance contribution 1.22
Combinations/Pair 1.05
Mean z-score -1.54
Structure conservation index 0.62
SVM decision value 0.52
SVM RNA-class probability 0.766130
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19781796 92 - 20766785
GCGGCAAAUAAUGUAAAACGCCAUUAGGCGAGAUUUUCUCAUACAAACAACAAUUGUGCAUUGGCACACCAG-------------GCUGACGUCG---------UCGUCUGGGA
...........((((....(((....)))(((.....))).)))).........(((((....)))))((((-------------((.(((...)---------)))))))).. ( -26.40)
>DroVir_CAF1 30279 92 - 1
GCGGCAAAUAAUGUAAAACGCCAUUAGGCGAGAUUUUCUCAUACAAACAACAAUUGUGCAUUGGCACACAGAGCGC-------CAGCUGACGUUCC---------CA------A
(((((......((((....(((....)))(((.....))).)))).........(((((....)))))......))-------).)).........---------..------. ( -22.90)
>DroGri_CAF1 24274 99 - 1
GCGGCAAAUAAUGUAAAACGCCAUUAGGCGAGAUUUUCUCGUACAAACAACAAUUGUGCAUUGGCAUACAGCGAACACCGACACAGCUGACGUUGG---------CG------A
...((......((((....(((....)))(((.....))).))))..((((...(((((....)))))((((.............))))..)))))---------).------. ( -24.82)
>DroWil_CAF1 37002 76 - 1
GCGGCAAAUAAUGUAAAACGCCAUUAGGCGAGAUUUUCUCAUACAAACAACAAUUGUGCAUUGGCAA--------------------------C------------GUCUACCA
..(((....((((((....(((....)))(((.....)))................))))))(....--------------------------)------------)))..... ( -15.40)
>DroYak_CAF1 22009 101 - 1
GCGGCAAAUAAUGUAAAACGCCAUUAGGCGAGAUUUUCUCAUACAAACAACAAUUGUGCAUUGGCACACCAG-------------CCUGACGUCGUCGUCGUCGUCGUCUGGGA
...........((((....(((....)))(((.....))).)))).........(((((....)))))((((-------------..(((((.((....)).))))).)))).. ( -29.30)
>DroMoj_CAF1 40884 92 - 1
GCGGCAAAUAAUGUAAAACGCCAUUAGGCGAGAUUUUCUCAUACAAACAACAAUUGGGCAUUGGCACACAGGGCGC-------CAGCUGACGCUGC---------CG------A
(((((......((((....(((....)))(((.....))).)))).....((.((((((.(((.....))).)).)-------))).))..)))))---------..------. ( -27.60)
>consensus
GCGGCAAAUAAUGUAAAACGCCAUUAGGCGAGAUUUUCUCAUACAAACAACAAUUGUGCAUUGGCACACAGG_____________GCUGACGUCG__________CG______A
.((((......((((....(((....)))(((.....))).)))).........(((((....))))).................))))......................... (-15.14 = -16.37 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:58 2006