| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,777,076 – 19,777,168 |
| Length | 92 |
| Max. P | 0.998663 |
| Location | 19,777,076 – 19,777,168 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 68.38 |
| Mean single sequence MFE | -25.18 |
| Consensus MFE | -18.11 |
| Energy contribution | -18.00 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.72 |
| SVM decision value | 3.18 |
| SVM RNA-class probability | 0.998663 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19777076 92 + 20766785 ----------------------UGUUCUAAUCCCAACUGAUUAUAU--CUCCUCAGCCCGAUGAACUCGACCCACUGCCACAGAUUGGAGGCAAUGCCUCAACAUGUGGCCAUUUA---- ----------------------.((((..(((....((((......--....))))...)))))))..........((((((.....(((((...)))))....))))))......---- ( -22.60) >DroSec_CAF1 19897 111 + 1 --UAAUACGGCUACCAUC-CGAUGUUCUAAUCCCUAAUGAUUAUAU--CACCUUAGUCCGACGAAUUCGACCCACUGCCACAGAUUGGAGGCAACGCCUCAACAUGUGGCCAUUUA---- --.....((((((.....-.(((((...((((......))))))))--)....))).))).((....)).......((((((.....(((((...)))))....))))))......---- ( -26.10) >DroYak_CAF1 17181 120 + 1 AGUACUAAGGCUAUCAUCCCCAUAUUCUAAUCUUAAGUGGUAAAAUAUCUUGCUAAUCUGCUGAACUCGACCCACUGCCACAGAUUGGAGGUGGUGCCUCAACUUGUGGCCAUUUCAUUC ........((((((((((.((....((((((((..(((((.......((..((......)).)).......))))).....)))))))))).)))).........))))))......... ( -26.84) >consensus __UA_UA_GGCUA_CAUC_C_AUGUUCUAAUCCCAAAUGAUUAUAU__CUCCUUAGUCCGAUGAACUCGACCCACUGCCACAGAUUGGAGGCAAUGCCUCAACAUGUGGCCAUUUA____ ...........................(((((......))))).................................((((((.....(((((...)))))....)))))).......... (-18.11 = -18.00 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:57 2006