Locus 631

Sequence ID 2R_DroMel_CAF1
Location 3,175,659 – 3,175,774
Length 115
Max. P 0.627394
window1127

overview

Window 7

Location 3,175,659 – 3,175,774
Length 115
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 83.99
Mean single sequence MFE -33.34
Consensus MFE -24.63
Energy contribution -24.30
Covariance contribution -0.33
Combinations/Pair 1.12
Mean z-score -1.84
Structure conservation index 0.74
SVM decision value 0.19
SVM RNA-class probability 0.627394
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3175659 115 - 20766785
AGCAGUAGAACUAU----UCCAUGCAAAUACCUUAGCAAGUAGGCAGCCAGUCCGAUAAUGGACGGCCAA-AAAUGAGGGGGCAGCACAAGCAAUUAGUAAGGCAGCCCAUUUUGUUUGG
..............----.(((.(((((..(((((((......)).(((.((((......)))))))...-...)))))((((.((....((.....))...)).))))..))))).))) ( -32.70)
>DroSim_CAF1 1820 120 - 1
UGCAGUAGAAAUACCAUAUUCAUGCAAAUACCUUAGGAAGUAGGCAGCCAGUCCGAUGAUGGACGGCCAAAAAAUGAGGGGGCAGCACAAGCAAUUGGUAAGGCAGCCCAUUUUGUUUGG
....(((....)))......((.(((((..(((((.......(((.....((((......)))).)))......)))))((((.((.(((....))).....)).))))..))))).)). ( -33.22)
>DroYak_CAF1 1863 110 - 1
CAAAGUAUAACUAU----UUCA------UACCUUAGGAAAUAGGCAGCUAGUCCAAUGAUGGACGGCCAAAAAAGGAGUGGGCAGCACAAGCAAUCGGUUAGGCAGCCCAUUUUGUUUGG
...(((....((((----(((.------........)))))))...))).(((((....)))))..(((((...(((((((((.((.(.(((.....))).))).))))))))).))))) ( -34.10)
>consensus
AGCAGUAGAACUAU____UUCAUGCAAAUACCUUAGGAAGUAGGCAGCCAGUCCGAUGAUGGACGGCCAAAAAAUGAGGGGGCAGCACAAGCAAUUGGUAAGGCAGCCCAUUUUGUUUGG
..............................((..(.(((((.(((.(((.(((((....))))).(((............))).((....)).........))).))).))))).)..)) (-24.63 = -24.30 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:13 2006