| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,759,501 – 19,759,597 |
| Length | 96 |
| Max. P | 0.639679 |
| Location | 19,759,501 – 19,759,597 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 82.64 |
| Mean single sequence MFE | -32.40 |
| Consensus MFE | -17.14 |
| Energy contribution | -18.45 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.83 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.639679 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19759501 96 + 20766785 -CCCAUGGCGUU-GGCCGGAAGUAGCCGGUCAUAAAAAUAAAACUCGAGAUGGCC---GACCAUCUCGCCAAGUCAAUGAGUCA-UUUGCUGCAAUGG--AAUG -.(((((((..(-((((((......)))))))..............(((((((..---..)))))))))).(((.((((...))-)).)))...))))--.... ( -33.60) >DroVir_CAF1 3563 91 + 1 GCAAAUGGCGUU-GGCCGGAAGUAGCCGGUCAUA------AAACUUGAGAUGACC---GGCCAUA-AGCCAAGUCAAUGAGUCACUUUACUGCAAUGG--CGCU ((...((((..(-((((((......))((((((.------.........))))))---)))))..-.)))).((((.(((((......))).)).)))--))). ( -34.00) >DroGri_CAF1 7815 92 + 1 GCAAAUGGCAUUUGUCCGGAAGUAGCCGGUCAUA------AAACUUGAGAUGACC---GGCCAAA-AGCCAAGUCAAUGAGUCACUUUACUGCAAUGG--CGCU ((...((((.((((..(....)..(((((((((.------.........))))))---)))))))-.)))).((((.(((((......))).)).)))--))). ( -32.20) >DroMoj_CAF1 9613 91 + 1 GCAAAUGGCGUU-AGCCGGAAGUAGCGGCUCAUA------AAACUUGAGAUGGCC---GGCCAUA-AGCCAAGUCAAUGAGUCACUUGGCCGCAAUCG--AGAU ((....(((...-.)))((....((.(((((((.------..(((((..((((..---..)))).-...)))))..))))))).))...)))).....--.... ( -29.70) >DroAna_CAF1 6772 96 + 1 CCGGAUGGCGUU-GGCCGGAAGUAGCCGGUCAUAAAAAUAAAACUCGAGAUGGCC---GGCCAUA-AGCCAAGUCAAUGAGUCA-UUUACUGCAAUGG--CAUC .....((((..(-((((((......))((((((................))))))---)))))..-.)))).((((.(((((..-...))).)).)))--)... ( -30.69) >DroPer_CAF1 5565 101 + 1 GCAAAUGGCGUU-GGCCGGAAGUAGCUGGUCAUAAAAAUAAAACUUGAGAUGGCCAACGGCCAUA-AGCCAAGUCAAUGAGUCA-UUUGCUGCAAUGGCCAAUA (((((((((..(-((((((......)))))))..........(((((..((((((...)))))).-...)))))......))))-))))).............. ( -34.20) >consensus GCAAAUGGCGUU_GGCCGGAAGUAGCCGGUCAUA______AAACUUGAGAUGGCC___GGCCAUA_AGCCAAGUCAAUGAGUCA_UUUACUGCAAUGG__AAUU .....((((....((((((......))))))..................((((((...))))))...))))...((.(((((......))).)).))....... (-17.14 = -18.45 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:55 2006