Locus 6303

Sequence ID 2R_DroMel_CAF1
Location 19,751,685 – 19,751,796
Length 111
Max. P 0.679427
window10074

overview

Window 4

Location 19,751,685 – 19,751,796
Length 111
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 87.03
Mean single sequence MFE -27.20
Consensus MFE -19.38
Energy contribution -19.90
Covariance contribution 0.52
Combinations/Pair 1.29
Mean z-score -1.89
Structure conservation index 0.71
SVM decision value 0.30
SVM RNA-class probability 0.679427
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19751685 111 - 20766785
UUUUCCUUUCAAUGAAAGCAUCGCAAAUGCGCUGAGAUACAAAAUAUUGUGUUUCUGCUCGACUUUUAAUUCUCCGUCUCCCCCGAAGGGAAAUAAAUUGCGUUUCGCUUC
.(((((((((...((..((((.....))))((.(((((((((....))))))))).))))(((............)))......)))))))))......(((...)))... ( -27.40)
>DroSec_CAF1 4498 111 - 1
UUUUCCUUUGAAUGAAAGCAUCGCAAAUGCGCUGAGAUACAAGAUAUUGUGUUUCUGCCCAACUUUUAAUUCUCCUCCUCCCCCGAAGAGGAAUAAAUUGCGUUUCGCUUC
...............((((..(((((.((.((.(((((((((....))))))))).)).))...........(((((.((....)).))))).....)))))....)))). ( -28.60)
>DroSim_CAF1 7510 111 - 1
UUUUCCUUUGAAUGAAAGCAUCGCAAAUGCGCUGAGAUACAAGAUAUUGUGUUUCUGCCCGACUUUUAAUUCUCCUCCUCCCCCGAAGAGGAAUAAAUUGCGUUUCGCUUC
...............((((..(((((.((.((.(((((((((....))))))))).)).))...........(((((.((....)).))))).....)))))....)))). ( -27.90)
>DroEre_CAF1 4678 101 - 1
UUUCUCUUUGAAUGAA----------ACGCGCUGAGAUACAAAAUACUGCGUUUCUGCCCGACUUUUAAUUCGCUGCCUCCCCUGAGGAGGAAUAAAUUGCGUUUCGCUUC
.........(((((((----------((((((.((((..((......))..)))).))..........((((.((.((((....)))))))))).....)))))))).))) ( -25.80)
>DroYak_CAF1 7448 111 - 1
UUUCUCCUUGAAUGAAAGCUUCACAAAUGCGCUGGGAUACGAGAUAUUGUGUUUCUGCCCGACUUUUAAUUCUCUGCCUGCCCCGAGGAGAAAUAAAUUGCGUUUCGCUUC
((((((((((.......((.........))((.(..((((((....))))))..).)).........................))))))))))......(((...)))... ( -26.30)
>consensus
UUUUCCUUUGAAUGAAAGCAUCGCAAAUGCGCUGAGAUACAAGAUAUUGUGUUUCUGCCCGACUUUUAAUUCUCCGCCUCCCCCGAAGAGGAAUAAAUUGCGUUUCGCUUC
((((((((((.......((((.....))))((.(((((((((....))))))))).)).........................))))))))))......(((...)))... (-19.38 = -19.90 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:47 2006