Locus 6302

Sequence ID 2R_DroMel_CAF1
Location 19,749,560 – 19,749,655
Length 95
Max. P 0.966673
window10073

overview

Window 3

Location 19,749,560 – 19,749,655
Length 95
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 79.98
Mean single sequence MFE -24.38
Consensus MFE -13.80
Energy contribution -14.72
Covariance contribution 0.92
Combinations/Pair 1.17
Mean z-score -2.54
Structure conservation index 0.57
SVM decision value 1.60
SVM RNA-class probability 0.966673
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19749560 95 + 20766785
UUCGCUACCUCUUAAAUUACAAAACAAGAGGAGCGGAGUAUUCAAAAUUGGGUGGGCUUAAAAACAAGUGAACUUCUAAAUGUUGGUAC-UUAAUC---------
..((((.((((((............))))))))))((((((.(((.(((.(((..((((......))))..)))....))).)))))))-))....--------- ( -22.20)
>DroSec_CAF1 2325 103 + 1
UUCGCUACCUCUUGAAUUACAAAACAAGAGGAGCCGAGUACUCAAAAAUGGGUGGGCUUAAAAACAAGUGAGUUUCUUAAAGUUGAUAC-UAAAUAGUAAAAAC-
((((((.(((((((..........)))))))((((...((((((....))))))))))........)))))).........(((..(((-(....))))..)))- ( -24.90)
>DroSim_CAF1 4815 103 + 1
UUCGCUACCUCUUGAAUUACAAAACAAGAGGAGCGGAGUAUUCAAAAAUGGGUGGGCUUAAAAACAAGUGAGUUUCUUAAAGUUGAUAC-UUAAUCGUAUUAAC-
((((((.(((((((..........)))))))))))))...........((((.(((((((........)))))))))))..((((((((-......))))))))- ( -27.80)
>DroEre_CAF1 2435 97 + 1
UUCGCUGGCUCUUAAAUUACAAAACAAGAAGAGCCGAGUGCUCAAAAGUGAGUUGGCUUAAAAACAAGUGAAUUUCUAAAUGU-GGCUUACUAG-------CACU
(((((((((((((...............)))))))(((((((((....)))))..)))).......))))))...........-.(((....))-------)... ( -23.66)
>DroYak_CAF1 5012 105 + 1
UUCGCUGGCUCUUGAAUUACAAAACAAAAAGAGCCGAAUAUUCAAAAGUGAGUUGGCUUAAAAACAAGUGAACUUCUAAAUGUUGGCAUAUCAAUCAUAGAAACU
.((((((((((((...............)))))))((....))...)))))(((.((((......)))).)))(((((...(((((....)))))..)))))... ( -23.36)
>consensus
UUCGCUACCUCUUGAAUUACAAAACAAGAGGAGCCGAGUAUUCAAAAAUGGGUGGGCUUAAAAACAAGUGAAUUUCUAAAUGUUGGUAC_UUAAUC_UA__AAC_
((((((..((((((..........))))))(((((...((((((....))))))))))).......))))))................................. (-13.80 = -14.72 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:46 2006