Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,749,451 – 19,749,547 |
Length | 96 |
Max. P | 0.977053 |
Location | 19,749,451 – 19,749,547 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 96.56 |
Mean single sequence MFE | -20.72 |
Consensus MFE | -19.64 |
Energy contribution | -19.40 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.58 |
Structure conservation index | 0.95 |
SVM decision value | 1.78 |
SVM RNA-class probability | 0.977053 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19749451 96 - 20766785 AAAUGUCAGCUCGAAAUUGUUAUGAAAUUUUCGCUGGCAUUAUUAUGCAUUUUGCUGAUAUAAACAAAUUAGUUUUUGCUGUGCUCCGCCCUUUCC .(((((((((..((((((.......)))))).))))))))).....(((....((((((........))))))...)))................. ( -21.00) >DroSec_CAF1 2216 96 - 1 AAAUGUCAGCUCGAAAUUGUUAUGAAAUUUUCGCUGGCAUUAUUAUGCAUUUUGCUGAUAUAAACAAAUUAGUUUUUGCUGUGCUCCGCCCUUUCC .(((((((((..((((((.......)))))).))))))))).....(((....((((((........))))))...)))................. ( -21.00) >DroSim_CAF1 4706 96 - 1 AAAUGUCAGCUCGAAAUUGUUAUGAAAUUUUCGCUGGCAUUAUUAUGCAUUUUGCUGAUAUAAACAAAUUAGUUUUUGCUGUGCUCCGCCCUUUCC .(((((((((..((((((.......)))))).))))))))).....(((....((((((........))))))...)))................. ( -21.00) >DroEre_CAF1 2326 96 - 1 AAAUGUCAGCUCCAAGUUGUUAUGAAAUUUUCGCUGGCAUUAUUGUGCAUUUUGCUGAUAUAAACAAAUUAGUUUUUGCUGUGCUCCGCCUGUGCC .(((((((((...(((((.......)))))..))))))))).....(((....((((((........))))))...))).(..(.......)..). ( -21.20) >DroYak_CAF1 4903 96 - 1 AAAUGUCAGCUCCAAGUUGUUAUGAAAUUUUCGCUGGCAUUAUUAUGCAUUUUGCUGAUAUAAACAAAUUAGUUUUUGCUGUGCUCCGCCUCUUCC .(((((((((...(((((.......)))))..))))))))).....(((....((((((........))))))...)))................. ( -19.40) >consensus AAAUGUCAGCUCGAAAUUGUUAUGAAAUUUUCGCUGGCAUUAUUAUGCAUUUUGCUGAUAUAAACAAAUUAGUUUUUGCUGUGCUCCGCCCUUUCC .(((((((((...(((((.......)))))..))))))))).....(((....((((((........))))))...)))................. (-19.64 = -19.40 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:45 2006