Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,318,700 – 1,318,820 |
Length | 120 |
Max. P | 0.591227 |
Location | 1,318,700 – 1,318,820 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.58 |
Mean single sequence MFE | -43.75 |
Consensus MFE | -35.03 |
Energy contribution | -35.27 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.11 |
Mean z-score | -1.49 |
Structure conservation index | 0.80 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.591227 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1318700 120 + 20766785 AGAUGCGCAAAUGAAAUGUGUCCCUGGCUGUGAGUCUGUAACUAGGAGAAGGACGAGGCACUUGUGUUGGCUCUGCGCACUUGGCCCAUAGUGAGGGGCGGUAGCCGAAACGGCAGUUGC ......((((........(((((((.((((((.(((........((((.((.(((((...))))).))..))))........))).)))))).)))))))...((((...))))..)))) ( -41.49) >DroSec_CAF1 37220 120 + 1 AGAGGCGCAAAUGAAAUGUGUCCCUCGCUGGGAGUGUGUAACUAGGAGAAGGACGAAGCACUUGUGUUGGCUCUGCGCACUUGGCCCACAGUGAGGGGCUGUAGCCGAAACGGCAGUUGU ......((((.........((((((((((((((((((((.....((((.((.((((.....)))).))..)))))))))))....)).)))))))))))....((((...))))..)))) ( -43.60) >DroSim_CAF1 16327 120 + 1 GGAGGCGCAAAUGAAAUGCGUCCCUCGCUGGGAGUGUGUAACUAGGAGAAGGACGAAGCACUUGUGUUGGCUCUGCGCACUUGGCCCACAGUGAGGGGCUGUAGCCGAAACGGCAGUUGU ...((((((.......)))((((((((((((((((((((.....((((.((.((((.....)))).))..)))))))))))....)).)))))))))))....)))..(((....))).. ( -45.40) >DroYak_CAF1 4810 113 + 1 AGAGGCGCAAGUGAAAUGUGUCCCUGGUUGGGAGUGUGUAACUAGGAGAAGGACAAAGCACUUGUGUUGGCUCUGCGCACUUGGGCUACAGUGAGGGGCUGUUGCCGAGCCGG------- ...((((((((((...(((.((((((((((.(....).)))))))).))...)))...))))))))))(((((....(....)(((.(((((.....))))).))))))))..------- ( -44.50) >consensus AGAGGCGCAAAUGAAAUGUGUCCCUCGCUGGGAGUGUGUAACUAGGAGAAGGACGAAGCACUUGUGUUGGCUCUGCGCACUUGGCCCACAGUGAGGGGCUGUAGCCGAAACGGCAGUUGU ...((((((.......)))(((((((((((.((((((((.....((((.((.((((.....)))).))..))))))))))))......)))))))))))....))).............. (-35.03 = -35.27 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:14 2006