Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,747,954 – 19,748,055 |
Length | 101 |
Max. P | 0.761263 |
Location | 19,747,954 – 19,748,055 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 92.74 |
Mean single sequence MFE | -38.92 |
Consensus MFE | -31.35 |
Energy contribution | -32.60 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.94 |
Structure conservation index | 0.81 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.761263 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19747954 101 + 20766785 CUCUGGGGGUAAUUAUGCAGCCAGGGGACCCAACUCGCCCCAACUCUUUGCGGGAGUAGGGUUUUCGUUUCGGUUUCGACAUGGGUAUCGGGAUCGGGAAU ((((((..(((....)))..))))))(((((.((((.((.(((....))).)))))).)))))....(..((((..(((........)))..))))..).. ( -38.30) >DroSec_CAF1 753 91 + 1 CUCUGGGGGUAAUUAUGCAGCCAGGGGACCCA----------ACUCUUUGCGGGAGUAGGGUUUUCGUUUCGGUUUCGACAUGGGGAUCGGGAUCGGGAAU ((((((..(((....)))..))))))(((((.----------(((((.....))))).)))))....(..((((..(((........)))..))))..).. ( -35.50) >DroSim_CAF1 3248 101 + 1 CUCUGGGGGUAAUUAUGCAGCCAGGGGACCCAACUCGCCCCAACUCUUUGCGGGAGUAGGGUUUUCGUUUCGGUUUCGACAUGGGGAUCGGGAUCGGGAAU ((((((..(((....)))..))))))(((((.((((.((.(((....))).)))))).)))))....(..((((..(((........)))..))))..).. ( -38.30) >DroEre_CAF1 810 101 + 1 CUCUGGGGGUAAUUAUGCAGCCAGGGGACCCAACUCGCCCCGACUCUUUGCGGGAGUAGGGUUUUCGUUUCGGUUUCGACAUGGGGAUCGGGUUGGGGAGU ((((((..(((....)))..))))))..((((((((((((((.(.....))))).))..((((..(((.(((....))).)))..)))))))))))).... ( -43.60) >consensus CUCUGGGGGUAAUUAUGCAGCCAGGGGACCCAACUCGCCCCAACUCUUUGCGGGAGUAGGGUUUUCGUUUCGGUUUCGACAUGGGGAUCGGGAUCGGGAAU ((((((..(((....)))..))))))..(((.......(((.(((((.....))))).))).....(((((((((((......))))))))))).)))... (-31.35 = -32.60 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:41 2006