Locus 6297

Sequence ID 2R_DroMel_CAF1
Location 19,747,549 – 19,747,665
Length 116
Max. P 0.580611
window10067

overview

Window 7

Location 19,747,549 – 19,747,665
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 86.63
Mean single sequence MFE -35.94
Consensus MFE -24.68
Energy contribution -24.68
Covariance contribution -0.00
Combinations/Pair 1.16
Mean z-score -1.83
Structure conservation index 0.69
SVM decision value 0.09
SVM RNA-class probability 0.580611
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19747549 116 - 20766785
---ACUAGGGAUGCAGAGCACGAUGCAAGUGCGUGGGUUUUGUGGGAAAAGCCAUAAAUCAAUCCCGGGUUUCAACAUGCUGGCUACAGGAAAUGGUCCAGCAGGAUAACCAGCA-UCAG
---......(((((...((((.......)))).((((.(((((((......))))))).....))))((((((....(((((((((.......))).)))))).)).)))).)))-)).. ( -40.00)
>DroSec_CAF1 337 117 - 1
---ACUAGGGAUGCAGAGCACGAUGCAAGUGCGUGGGUUUUGUGGGAAAAGCCAUAAAUCAAUCGCUGGUUUCAACAUGCUGGCCACAGGAAAUGGUCCAGCAGGAUAACCAGCAACCAG
---....((((((((((((.(.((((....)))).))))))))((......))....)))....(((((((((....(((((((((.......))).)))))).)).)))))))..)).. ( -43.30)
>DroSim_CAF1 2832 117 - 1
---ACUAGGGAUGCAGAGCACGAUGCAAGUGCGUGGGUUUUGUGGGAAAAGCCAUAAAUCAAUCGCUGGUUUCAACAUGCUGGCUACAGGAAAUGGUCCAGCAGGAUAACCAGCAACCAG
---....((((((((((((.(.((((....)))).))))))))((......))....)))....(((((((((....(((((((((.......))).)))))).)).)))))))..)).. ( -41.00)
>DroEre_CAF1 372 114 - 1
GGAACUAGGGAUGCAGAGCACGAUGCAAAUGCGUGGGUUUUGUGGGAAAAGCUAUAAAUCAAUCCUUUCGUACAACAGGCUAGCUACAGGAAAUGCUGCAGCAGGAUGUGC------CGA
.(((...((((((((((((.(.((((....)))).))))))))((......))........))))))))(((((.(..(((.((..((.....))..)))))..).)))))------... ( -30.00)
>DroYak_CAF1 2877 111 - 1
---ACUAGGGAUGCAGAGCACGAUGCAAAUGCGUGGGUUUUGUGGGAAAAGCUAUAAAUCAAUCCUUUCGUACAACAUGCUGGCUACAGGAAAUGCUCCACCAGGAUAUGC------CCA
---....(((.((((........))))..((((.(((((((((((......))))))...)))))...))))....((.((((.....(((.....))).)))).))...)------)). ( -25.40)
>consensus
___ACUAGGGAUGCAGAGCACGAUGCAAGUGCGUGGGUUUUGUGGGAAAAGCCAUAAAUCAAUCCCUGGUUUCAACAUGCUGGCUACAGGAAAUGGUCCAGCAGGAUAACCAGCA__CAG
.......((((((((((((.(.((((....)))).))))))))((......))........))))).((((......((((((...((.....))..))))))....))))......... (-24.68 = -24.68 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:40 2006