| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,745,799 – 19,745,893 |
| Length | 94 |
| Max. P | 0.704604 |
| Location | 19,745,799 – 19,745,893 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 96.48 |
| Mean single sequence MFE | -23.83 |
| Consensus MFE | -21.33 |
| Energy contribution | -22.00 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.704604 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19745799 94 + 20766785 GCCCAGAAAGCUCUUUCAUCGCAUGACAG-GCGGCCGAAACGUUUAAGCCAAAACGAAAAAGCGGUCAACAAGUUGAAGGGAAGAGCAAAAACUU .........((((((((.((((.......-))(((((...(((((......)))))......)))))........))..))))))))........ ( -24.00) >DroSim_CAF1 1109 95 + 1 GCCCAGAAAGCUCUUUCAUCGCAUGACAGGGCGGCCGAAACGUUUAAGCCAAAACGAAAAAGCGGUCAACAAAUUGAAUGGAAGAGCAAAAACUU .........(((((((((((((........))(((((...(((((......)))))......)))))........).))))))))))........ ( -26.10) >DroYak_CAF1 1056 94 + 1 GCCCAGAAAGCUCUUUCAUCGCAUGACAG-GCGGCCGAAACGUUUAAGCCAAAACGAAAAAGCGGUCAACAAGUUGAAGCGCAGAGCAAAAACUU .........((((((((.((((.......-))))..))).(((((......))))).....(((.((((....))))..))))))))........ ( -21.40) >consensus GCCCAGAAAGCUCUUUCAUCGCAUGACAG_GCGGCCGAAACGUUUAAGCCAAAACGAAAAAGCGGUCAACAAGUUGAAGGGAAGAGCAAAAACUU .........((((((((...((........))(((((...(((((......)))))......)))))............))))))))........ (-21.33 = -22.00 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:33 2006