Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,744,066 – 19,744,158 |
Length | 92 |
Max. P | 0.685455 |
Location | 19,744,066 – 19,744,158 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 92.85 |
Mean single sequence MFE | -31.46 |
Consensus MFE | -24.82 |
Energy contribution | -25.62 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.62 |
Structure conservation index | 0.79 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.685455 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19744066 92 + 20766785 CUUUUUGCCGGAUUUGUGACAGGCUUCAUUGCCAGAAAAUCUGCUGUGCGACUGUGCGACUGCGAUAAGCGCAGCUGCCGGAGAUUCGGAUA- .......((((((((.((.(((((......))).........(((((((.....(((....)))....))))))))).)).))))))))...- ( -32.30) >DroSec_CAF1 52622 89 + 1 CUUUUUGCCGGAUUUGUGACAGGCUUCAUUGCCAGAAAAUCU---GUGGGGCUGUGCGACUGCGAUAAGCGCAGCUGCCGGAGAUUCGGAUA- .......(((((((.......(((......)))......(((---(.(.((((((((...........)))))))).))))))))))))...- ( -32.30) >DroSim_CAF1 54701 89 + 1 CUUUUUGCCGGAUUUGUGACAGGCUUCAUUGCCAGAAAAUCU---GUGGGGCUGUGCGACUGCGAUAAGCGCAGCUGCCGGAGAUUCGGAUA- .......(((((((.......(((......)))......(((---(.(.((((((((...........)))))))).))))))))))))...- ( -32.30) >DroEre_CAF1 53474 90 + 1 CUUUUUGCCGGAUUUGUGACAGGCUUCAUUGCCAGAAAAUUU---GUGGGGCUGUGCGACUGCGAUAAGCGCAGCUGGCGGAGAUUCUGGUUC ......(((............)))......(((((((..(((---((.((.((((((...........)))))))).)))))..))))))).. ( -29.90) >DroYak_CAF1 53565 90 + 1 CUUUUUGCCGGAUUUGUGACAGGCUUCAUUGCCAGAAAAUCU---AUGUGCCUGUGCGACUGCGAUAAGCGCAGCUGGCGGAGAUUGGGAUGC .((((((((((..((((.((((((..(((.............---))).))))))))))(((((.....)))))))))))))))......... ( -30.52) >consensus CUUUUUGCCGGAUUUGUGACAGGCUUCAUUGCCAGAAAAUCU___GUGGGGCUGUGCGACUGCGAUAAGCGCAGCUGCCGGAGAUUCGGAUA_ .......((((((((.((...(((......)))................((((((((...........))))))))..)).)))))))).... (-24.82 = -25.62 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:30 2006