Locus 6290

Sequence ID 2R_DroMel_CAF1
Location 19,742,540 – 19,742,633
Length 93
Max. P 0.997743
window10056

overview

Window 6

Location 19,742,540 – 19,742,633
Length 93
Sequences 3
Columns 93
Reading direction forward
Mean pairwise identity 72.97
Mean single sequence MFE -16.40
Consensus MFE -12.99
Energy contribution -13.43
Covariance contribution 0.45
Combinations/Pair 1.05
Mean z-score -1.82
Structure conservation index 0.79
SVM decision value 2.92
SVM RNA-class probability 0.997743
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19742540 93 + 20766785
AUUCUUGAGUGUUUCUGACACUAUUUGGCCAAUUUAUGAUAGUUACUCUGUCAUUUUAUGCUCAAAAAUUUGAUAUUUCAACCGAUUGGUGUU
................(((((((.((((.......(((((((.....)))))))...............((((....)))))))).))))))) ( -18.60)
>DroSec_CAF1 51868 73 + 1
AUUUUUAAGUGUUUCUGACACUAUUUGGCAAAUUAAUGAUAGGGAGUCUGUAAUUUUAUACCCAAAAAAUGGA--------------------
.......((((((...)))))).(((((......(((.((((.....)))).)))......))))).......-------------------- (  -9.70)
>DroSim_CAF1 53956 73 + 1
AUUUUUAAGUGUUUCUGACACUAUUUGGCAAAUUAAUGAUAGUGAGUCUGUCAUUUUAUGGCCAAAAUAUGGU--------------------
.......((((((...)))))).((((((.....((((((((.....)))))))).....)))))).......-------------------- ( -20.90)
>consensus
AUUUUUAAGUGUUUCUGACACUAUUUGGCAAAUUAAUGAUAGUGAGUCUGUCAUUUUAUGCCCAAAAAAUGGA____________________
.......((((((...)))))).(((((......((((((((.....))))))))......)))))........................... (-12.99 = -13.43 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:29 2006