Locus 6289

Sequence ID 2R_DroMel_CAF1
Location 19,741,413 – 19,741,511
Length 98
Max. P 0.554026
window10055

overview

Window 5

Location 19,741,413 – 19,741,511
Length 98
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 90.04
Mean single sequence MFE -26.70
Consensus MFE -18.88
Energy contribution -20.92
Covariance contribution 2.04
Combinations/Pair 1.04
Mean z-score -1.91
Structure conservation index 0.71
SVM decision value 0.04
SVM RNA-class probability 0.554026
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19741413 98 + 20766785
UGUUGGAAAUGUAAAAGGCAUGUCAAAAAUUUCCAGCUGGCUUCGAGCGGCAUUAGUUUUGCCAUUUAACAAUU------UGAAUGGCAAGCAUUCCGGCAACG
((((((((.(((.......................((((........)))).......(((((((((((....)------)))))))))))))))))))))... ( -27.90)
>DroSec_CAF1 51035 98 + 1
UGUUGGAAAUGUAAAAGGCAUGUCAAAAAUUUCCAGCUGGCUUCGAGCGGCAUUAGUUUUGCCAUUUAACAAUU------UGAAUGGCAAGCAUUCCAGCAACG
((((((((.(((.......................((((........)))).......(((((((((((....)------)))))))))))))))))))))... ( -28.70)
>DroEre_CAF1 51338 98 + 1
UGUUGGAAAUGUAAAAGGCAUGUCAAAAAUUUGCAGCUGGCUUCGAGCGGCAUUAGUUUUGCCAUUUAACAAUU------UGAAUGGCAAGCAUUCCGGCAACG
((((((((((((.....))))..........(((.((((........)))).......(((((((((((....)------)))))))))))))))))))))... ( -30.40)
>DroYak_CAF1 51881 104 + 1
UGUUGGAAAUGUAAAAGGCAUGUCAAAAAUUUCCAGCUGGCUUCGAGCGGCAUUAGUUUUGCCAUUUAACAAUUUGAAUUUGAAUGGCAAGCAUUCCGGCAACG
((((((((.(((.......................((((........)))).......(((((((((((..........))))))))))))))))))))))... ( -27.00)
>DroAna_CAF1 51874 90 + 1
UGUUACAAAUGUAAAAGGAAUGUCAAAAAUUUCCAGCUUCCUUCAAGCGGCAUUAGUUUUGC--------AAUU------UGAAUGGCAAGCAUUCCGGGUAUG
..((((....))))..((((..........)))).((((((((((((..(((.......)))--------..))------)))).)).))))............ ( -19.50)
>consensus
UGUUGGAAAUGUAAAAGGCAUGUCAAAAAUUUCCAGCUGGCUUCGAGCGGCAUUAGUUUUGCCAUUUAACAAUU______UGAAUGGCAAGCAUUCCGGCAACG
((((((((.(((.......................((((........)))).......((((((((((............)))))))))))))))))))))... (-18.88 = -20.92 +   2.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:29 2006