Locus 6287

Sequence ID 2R_DroMel_CAF1
Location 19,739,256 – 19,739,373
Length 117
Max. P 0.631052
window10050

overview

Window 0

Location 19,739,256 – 19,739,373
Length 117
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 74.53
Mean single sequence MFE -25.90
Consensus MFE -17.55
Energy contribution -19.18
Covariance contribution 1.63
Combinations/Pair 1.12
Mean z-score -1.49
Structure conservation index 0.68
SVM decision value 0.20
SVM RNA-class probability 0.631052
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19739256 117 - 20766785
AUUCCAGGCGAAUAUUUCGUUUGAUAGUUCUGCAAACGGGAAGAAUUCAAUGGUCUGCCAUUUGAAGGAUUUCAUAUUUAAAUGGAAAUUAGUAUGUCUGGUGCAAA-GGGUU--UCGAC
...((((((((((.(..((((((.((....))))))))..)...))))..((((...(((((((((.(....)...)))))))))..))))....))))))......-.....--..... ( -27.30)
>DroSec_CAF1 48920 111 - 1
AUUCCAGACGAAUAUUUCAUUUGAUAGUCCUGCAAACGGGAAGAAUUCAAUGGGCUGCCAUUUGAAGGAUUUAUUAUUUAAAUGGAAAUUAGUAUGUCUGGUGCCA---------UCGAC
...(((((((......(((((.(((..(((((....)))))...))).)))))(((((((((((((..........)))))))))....)))).))))))).....---------..... ( -27.30)
>DroEre_CAF1 49169 88 - 1
AUGCCAGACGAAUAUUUCAUUUGAUAGUCCUGCAAACGGGACUGA------------------------UUUUUUAUUUAAAUGGAAAUUAGUAUGUCUGGUGCAAA-GAGUC-------
..((((((((.((.((((((((((((((((((....)))))))).------------------------........))))))))))....)).)))))))).....-.....------- ( -26.60)
>DroYak_CAF1 49589 104 - 1
AUGCCAGACGAAUAUUUCAUUUGAUAGUCCGGCAAACGGGAUGGAUU-------------UUU---GGAUUUUUUAUUUAAAUGGAAAUUAGCAUGUCUGGUGCAAAAGGGUCUCUCGAC
.((((.(((...((((......))))))).))))..(((((..((((-------------(((---.(((((((.........))))))).((((.....))))..)))))))))))).. ( -22.40)
>consensus
AUGCCAGACGAAUAUUUCAUUUGAUAGUCCUGCAAACGGGAAGAAUU_____________UUU___GGAUUUUUUAUUUAAAUGGAAAUUAGUAUGUCUGGUGCAAA_GGGUC__UCGAC
.(((((((((..((((((((((((..((((((....))))))......(((((....)))))...............))))))))))..))...)))))))))................. (-17.55 = -19.18 +   1.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:24 2006