Locus 6286

Sequence ID 2R_DroMel_CAF1
Location 19,736,210 – 19,736,302
Length 92
Max. P 0.531674
window10049

overview

Window 9

Location 19,736,210 – 19,736,302
Length 92
Sequences 4
Columns 92
Reading direction forward
Mean pairwise identity 89.86
Mean single sequence MFE -25.90
Consensus MFE -21.90
Energy contribution -21.65
Covariance contribution -0.25
Combinations/Pair 1.16
Mean z-score -1.37
Structure conservation index 0.85
SVM decision value -0.00
SVM RNA-class probability 0.531674
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19736210 92 + 20766785
UUAUGCACUUUUAGGAUUGUUUGCAAUGCGCUCGAGAAGGGGAUUGUUCCAUUAUGCGAUAAGCACUGGGACGCUCCCAAGGUGUUCCACUG
....(((((((..(.((((....)))).)..........((((.(((((((...(((.....))).))))))).)))))))))))....... ( -27.90)
>DroEre_CAF1 46127 92 + 1
UUAUGCACUUUUAGGAUUGUUUGCAAUGCGCUCGAGAAGGGGAUUGUUCCAUUAUGCGAUAAGCACUGGGACUCUCUCAAGGUGUUCCACAG
....(((((((..(.((((....)))).)..........((((..((((((...(((.....))).))))))..)))))))))))....... ( -24.30)
>DroYak_CAF1 46555 92 + 1
UUAUGCACUUUUAGGAUUGUUUGCCAUGCGCUCGAGAAGGGGAUUGUUCCAUUAUGCGAUAAGCACUGGGACUCCCUCAAGGUGUUCCACUG
....(((((((.(((...(((..((((((..(((......(((....)))......)))...))).))))))..))).)))))))....... ( -24.30)
>DroAna_CAF1 46576 85 + 1
UUAUGCACUUUUAGGAUUGUUUGCAAUGCGCUCGAAAGUGGAAUUGUUCCAUUAUGCGAUAAGCAUUGGGAUUCUCUUAAGGUGU-------
....(((((((.((((..((((.((((((..(((..((((((.....))))))...)))...))))))))))..)))))))))))------- ( -27.10)
>consensus
UUAUGCACUUUUAGGAUUGUUUGCAAUGCGCUCGAGAAGGGGAUUGUUCCAUUAUGCGAUAAGCACUGGGACUCUCUCAAGGUGUUCCACUG
....(((((((..(.((((....)))).).........((((...((((((...(((.....))).))))))..)))))))))))....... (-21.90 = -21.65 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:23 2006