| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,722,659 – 19,722,753 |
| Length | 94 |
| Max. P | 0.777225 |
| Location | 19,722,659 – 19,722,753 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 77.09 |
| Mean single sequence MFE | -26.22 |
| Consensus MFE | -16.73 |
| Energy contribution | -17.15 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.777225 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19722659 94 - 20766785 CAGGUGACCAACACCUUCCAGAUGACUCACUUUGCGGUCAUCAAGCGCCAGUGGCCACCGUCGCCGUCCAACCUGGGCAA--CUCCUAAGGC---CCGU----------- .(((((.....)))))....(((((((........)))))))..(.(((.(((((....))))).((((.....))))..--.......)))---.)..----------- ( -28.90) >DroPse_CAF1 36964 106 - 1 CAGCUGACAAACACCUUUCAGAUGACUCACUUUGCCGUCAUCAAGCGGCAGUGGCCGCCGUCGCCGUCCAAUCUGAGCAA--AUCGUAAGAUA--ACCUGGCUCCAACUG (((..(((............((((((..........))))))..(((((....))))).)))((((..(.....)..)..--(((....))).--....))).....))) ( -28.60) >DroWil_CAF1 49741 94 - 1 CAGCUGACAAACACCUUUCAGAUGACUCACUUUGCCGUCAUCAAACGGCAAUGGCCUCA---GCCGUCCAAUCUGAGUAA--CUCAUAAAAUGGGCCCU----------- ..(((((.............((((((..........))))))....(((....))))))---)).(((((...((((...--)))).....)))))...----------- ( -24.20) >DroMoj_CAF1 57222 93 - 1 CAGCUGACAAACACCUUUCAAAUGACGCACUUUGCUGUUAUCAAGCGGCAAUGGCCGCCACCGCCGUCCAAGCUCACC--AACUCAUAGGCA---UCC------------ .(((((((.............(((((((.....)).)))))...(((((....))))).......)))..))))..((--........))..---...------------ ( -19.30) >DroAna_CAF1 32969 94 - 1 CAGGUGACAAACACCUUUCAGAUGACUCACUUUGCCGUCAUCAAGCGGCAGUGGCCGCCCUCGCCGUCCAAUCUCAGCAA--CAACUAGGAC---CCCC----------- ..(((((.............((((((..........))))))..(((((....)))))..)))))((((...........--......))))---....----------- ( -26.73) >DroPer_CAF1 33215 106 - 1 CAGCUGACAAACACCUUUCAGAUGACUCACUUUGCCGUCAUCAAGCGGCAGUGGCCGCCGUCGCCGUCCAAUCUGAGCAA--AUCGUAAGAUA--ACAUGGCUCCAACUG (((..(((............((((((..........))))))..(((((....))))).)))(((((...((((..((..--...)).)))).--..))))).....))) ( -29.60) >consensus CAGCUGACAAACACCUUUCAGAUGACUCACUUUGCCGUCAUCAAGCGGCAGUGGCCGCCGUCGCCGUCCAAUCUGAGCAA__CUCAUAAGAU___CCCU___________ .................(((((((((.....(((((((......))))))).(((.......))))))..)))))).................................. (-16.73 = -17.15 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:18 2006